1 5' 3' | 2 5' 3' | 3 5' 3' |
...tactctttgttgttcctcacaactttttgcctttactcccactcacatccatcgtttctgctcggtgtttctcacatccttttctttcttttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGCCAGCGTTACAAGATCGTGGCTTTACCTGGCATGGGTGAGCACAGTCGC
species | Selaginella moellendorffii |
transcript | EFJ14419 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCCTCGTGATTCTCATTCTCTCCAACGTCGCATCCAACGTTCCAACTG TGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGEST: gi|169094344|gb|FE495570.1|FE495570
genomic: ATCCCTCGTGATTCTCATTCTCTCCAACGTCGCATCCAACGTTCCAACTGgtgagtcatt ... ttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGG
EST: ATCCCTCGTGATTCTCATTCTCTCCAACGTCGCATCCAACGTTCCAACTG TGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGEST: gi|169048166|gb|FE455438.1|FE455438
genomic: ATCCCTCGTGATTCTCATTCTCTCCAACGTCGCATCCAACGTTCCAACTGgtgagtcatt ... ttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGG
EST: ATCCCTCGTGATTCTCATTCTCTCCAACGTCGCATCCAACGTTCCAACTG TGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGEST: gi|169041674|gb|FE449583.1|FE449583
genomic: ATCCCTCGTGATTCTCATTCTCTCCAACGTCGCATCCAACGTTCCAACTGgtgagtcatt ... ttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGG
EST: ATCCCTCGTGATTCTCATTCTCTCCAACGTCGCATCCAACGTTCCAACTG TGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGG
genomic: ATCCCTCGTGATTCTCATTCTCTCCAACGTCGCATCCAACGTTCCAACTGgtgagtcatt ... ttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGG
catccatcgtttctgctcggtgtttctcacatccttttctttcttttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGCCAGCGTTACAAGATCGTGGCTTTACCTGGCATGGGTGAGCACAGTCGC
ttctcac putative branch site (score: 16)
ctcggtgtttctcaca CT-rich tract
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactctttgttgttcctcacaactttttgcctttactcccactcacatccatcgtttctgctcggtgtttctcacatccttttctttcttttctctgcagTGCTGCTTTTGGGAACACGGGTGGCGGCATCGGCCGCGGCGATTCACGGGGCCAGCGTTACAAGATCGTGGCTTTACCTGGCATGGGTGAGCACAGTCGC
- -tctttgt
- - - - - tgttcct
- - - - - - - - - - - -tttttgc
- - - - - - - - - - - - - - - -tttactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgc