1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgcgagtttctttctcacctttttgttttcgtgtgatgctaatgcgacagctttgtagGCTTTGGACGCCATTGAGAGGCTGCGAAGCAACGTAGACACACTCATTGTGATCCCCAACGACAGGCTGCTGGACTTGGTTCAAGAACACACTCCTTTGC
species | Selaginella moellendorffii |
transcript | EFJ14098 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGACGATCTCAACAG GCTTTGGACGCCATTGAGAGGCTGCGAAGCAACGTAGACACACTCATTGTGEST: gi|169063875|gb|FE471230.1|FE471230
genomic: CGACGATCTCAACAGgtgcgcgagt ... agctttgtagGCTTTGGACGCCATTGAGAGGCTGCGAAGCAACGTAGACACACTCATTGTG
EST: GTGTTGTCACGTATCCTTTTACTTTCGAAGGGAGACGACGATCTCAACAG GCTTTGGACGCCATTGAGAGGCTGCGAAGCAACGTAGACACACTCATTGTG
genomic: GTGTTGTCACGTATCCTTTTACTTTCGAAGGGAGACGACGATCTCAACAGgtgcgcgagt ... agctttgtagGCTTTGGACGCCATTGAGAGGCTGCGAAGCAACGTAGACACACTCATTGTG
gagtttctttctcacctttttgttttcgtgtgatgctaatgcgacagctttgtagGCTTTGGACGCCATTGAGAGGCTGCGAAGCAACGTAGACACACTCATTGTGATCCCCAACGACAGGCTGCTGGACTTGGTTCAAGAACACACTCCTTTGC
tgctaat putative branch site (score: 5)
tttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgagtttctttctcacctttttgttttcgtgtgatgctaatgcgacagctttgtagGCTTTGGACGCCATTGAGAGGCTGCGAAGCAACGTAGACACACTCATTGTGATCCCCAACGACAGGCTGCTGGACTTGGTTCAAGAACACACTCCTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC