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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgctccctttctttcttaggaaagtgcttgagacatacctttgtatttgcagAGTCCCGATGGTTATACTGTGGCATCGGCCGCTGGCGACGAGACTTTGCGCTTCTGGCAGGTGTTCGGGACACCCGACACAACAAAGGCGACAGCGGTCA

Basic information

species Selaginella moellendorffii
transcript EFJ13752
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13752 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S8_56V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------------------------gtctgctccctttctttctta-------ggaaagtgcttgagacatacctt------tgtatttgcagAGTCCCGATGGTTATACTGTGGCATCGGCCGCTGGCGACGAGACTTTGCGCTTCTGGCAGGTGTTCGGGACACCCGACACAACAAAGGCGACAGCGGTCA-
                                                   || |||   | |    || |        || | ||   ||||| |||| |       ||   | ||||||||||||||| || ||||||||||| || || ||||||||||||||| | || ||| | |||||||| ||||| ||  | | |   | || | | | || 
gttagtaattgcacctagaccacatcactggtcgctgttcatgaatttccagtttgcgttcatcaggtcctgtgcgccggggatgtctctgagagatacgtcgtgatgtggtctagcagAGTCCCGATGGATACACTGTGGCATCCGCTGCCGGCGACGAGACTTTGAGATTTTGGAATGTGTTCGGAACACCTGAGGCCAAATTAGTGA-ACCAGGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgctccctttctttcttaggaaagtgcttgagacatacctttgtatttgcagAGTCCCGATGGTTATACTGTGGCATCGGCCGCTGGCGACGAGACTTTGCGCTTCTGGCAGGTGTTCGGGACACCCGACACAACAAAGGCGACAGCGGTCA
                                        cctttgt  CT-rich tract
                                          tttgtattt  TA-rich tract