Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgaaaaaaaagatggaaaaagttctctcgaattcttttctttgctaaagttgattgttcttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCAAGAAGGCGCTGGCAAACACTTAAAAGCCGGTGCCAAGAAGGTGCTCATC

Basic information

species Selaginella moellendorffii
transcript EFJ13677
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169054147|gb|FE463110.1|FE463110
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169108257|gb|FE513566.1|FE513566
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169105410|gb|FE507669.1|FE507669
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169019431|gb|FE427117.1|FE427117
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169061677|gb|FE469867.1|FE469867
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169099029|gb|FE501763.1|FE501763
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169083187|gb|FE493792.1|FE493792
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169049798|gb|FE458839.1|FE458839
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169033150|gb|FE441482.1|FE441482
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169110796|gb|FE512646.1|FE512646
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169036130|gb|FE445144.1|FE445144
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169055807|gb|FE465373.1|FE465373
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169063593|gb|FE471699.1|FE471699
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169069981|gb|FE476450.1|FE476450
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169036693|gb|FE444199.1|FE444199
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169039626|gb|FE448560.1|FE448560
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169030819|gb|FE440297.1|FE440297
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169106335|gb|FE506255.1|FE506255
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169110287|gb|FE510616.1|FE510616
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169019833|gb|FE426920.1|FE426920
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169052039|gb|FE460378.1|FE460378
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169068901|gb|FE477242.1|FE477242
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169111233|gb|FE510860.1|FE510860
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169038655|gb|FE446928.1|FE446928
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169066942|gb|FE474398.1|FE474398
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169037786|gb|FE442497.1|FE442497
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169071889|gb|FE477630.1|FE477630
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169114147|gb|FE516826.1|FE516826
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169042499|gb|FE450980.1|FE450980
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169044071|gb|FE451657.1|FE451657
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169079682|gb|FE486346.1|FE486346
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169105766|gb|FE508532.1|FE508532
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169077647|gb|FE484909.1|FE484909
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169071895|gb|FE477636.1|FE477636
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169066496|gb|FE476253.1|FE476253
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169061679|gb|FE469869.1|FE469869
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169058080|gb|FE463975.1|FE463975
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169031026|gb|FE440348.1|FE440348
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169066992|gb|FE474422.1|FE474422
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169108812|gb|FE513081.1|FE513081
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169105155|gb|FE504827.1|FE504827
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169115597|gb|FE517807.1|FE517807
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169064609|gb|FE471340.1|FE471340
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169062209|gb|FE471049.1|FE471049
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169061368|gb|FE470936.1|FE470936
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169069791|gb|FE480303.1|FE480303
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169022182|gb|FE430985.1|FE430985
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169071780|gb|FE477157.1|FE477157
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169072313|gb|FE479406.1|FE479406
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169100502|gb|FE502703.1|FE502703
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169067263|gb|FE473874.1|FE473874
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169068350|gb|FE480721.1|FE480721
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169102749|gb|FE508611.1|FE508611
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169103008|gb|FE504736.1|FE504736
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169033912|gb|FE441944.1|FE441944
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169056259|gb|FE464394.1|FE464394
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCATGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169068401|gb|FE478991.1|FE478991
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169097531|gb|FE497973.1|FE497973
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169083655|gb|FE495895.1|FE495895
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169024910|gb|FE435537.1|FE435537
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169055976|gb|FE466165.1|FE466165
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169059314|gb|FE467482.1|FE467482
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169037516|gb|FE443059.1|FE443059
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
EST: gi|169099413|gb|FE501003.1|FE501003
EST:     AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGG                         AGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA
genomic: AAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 172

TCGACGCCGACGTGAAAGTATCTGGAGACAGCGCCATCTCGGTTGATGGCAAAGTCATCAAGGTGGTCTCCAACCGAGATCCTCTCAAGTTGCCATGGGGgtgagcgaaa ... cttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCAAGAAGGCGCTGGCAAACACTTAAAAGCCGGTGCCAAGAAGGTGCTCATC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaaaagttctctcgaattcttttctttgctaaagttgattgttcttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCAAGAAGGCGCTGGCAAACACTTAAAAGCCGGTGCCAAGAAGGTGCTCATC
                                        ttgttcttcttcc  CT-rich tract
                aattctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcgaaaaaaaagatggaaaaagttctctcgaattcttttctttgctaaagttgattgttcttcttccagAGAGCTTGGAGTGGATCTCGTGATCGAAGGCACCGGCGTCTTCGTGGATCAAGAAGGCGCTGGCAAACACTTAAAAGCCGGTGCCAAGAAGGTGCTCATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG