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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgattgagaagaaaatcgcatcattgttttattcatgattcttttcttttcattgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACAATCCTG

Basic information

species Selaginella moellendorffii
transcript EFJ13340
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13340 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA09G35980.1 (Glycine max), 3'ss of exon 3
-------------------------------------gtatgtgattgagaagaaaatcgcatcattgttttattcatgattct-----tttcttttcattgctcagTTCTTTCGGGCCC-GTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACAATCCTG
                                     |  || |||      | | |     |||  |    |   || |   |     |||  ||   ||| | |    |||  ||||| || |||||||||||||| || |||||||| ||| ||||||||||||| || ||||||   ||  | ||||| ||   |   || || 
gttattattgcttaggtttagctgtaactttagcttcgactgggatcattgtgcatagttggtcagcggcagaaatattaacttgagtttttaattctgttgttgaagCATTTATGGCCCAGTGCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTTACCTTTGTTTATCCAGAGACTGTGAAGCTTATTCTA

upper sequence: EFJ13340 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA12G01350.1 (Glycine max), 3'ss of exon 2
-------------------------------------gtatgtgattgagaagaaaatcgcatcattgttttattcatgattcttttcttttcattgctca-gTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACAATCCTG
                                        ||||  |     |   || |||  | | ||  | | ||  ||  ||| |||   ||| | | |    |  || || || |||||||||||||| || |||||||| ||| |||||||||| || || ||||||   ||  | ||||||||   |   || || 
gttattattgtttaggtttaactttgttaactggggtcagtgtgcatagttggtcgatggcagaaatatta-acttatagtt--tttatttctgttgttgaagCATATATGGTCCTGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTTACCTTTGTTTATCCAGAGACCGTGAAGCTTATTCTA

upper sequence: EFJ13340 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA12G01340.1 (Glycine max), 3'ss of exon 3
-------------------------------------gtatgtgattgagaagaaaatcgcatcattgttttattcatgattcttttcttttcattgctca-gTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACAATCCTG
                                        ||||  |     |  ||| |||  | | ||  | | ||  ||  ||| |||   ||| | | |    |  || || || |||||||||||||| || |||||||| ||| |||||||||| || || ||||||   ||  | ||||||||   |   || || 
gttattattgtttaggtttaactttgttaactggggtcagtgtgcatagttggtcaatggcagaaatatta-acttatagtt--tttatttctgttgttgaagCATATATGGTCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTTACCTTTGTTTATCCAGAGACCGTGAAGCTTATTCTA

upper sequence: EFJ13340 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: AT3G63450.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtgattgagaagaaaatcgcatcattgtt-ttattcatgattcttttcttt------tcattgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACAATCCTG
|||| |  |   |     || |   ||||| || || ||     || | | |||       |  | |  |||| | || ||||| || || ||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| | |||| | ||||| ||   ||  || |||
gtat-tactcttgtttggaacccattcattcttcttgttggatgttgtctacttaaagcaatggtggtgcagTACGTTTGGGCCAGTTCAGGACGTGAGGATACCTTACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGAGACTGTGAAGAGCATTCTG

upper sequence: EFJ13340 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: AT3G51950.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------gtatgtgattgagaagaaaatcgcatcattgttttattcatgattcttttcttttcattgct-cagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACAATCCTG
                          | | |||  |    ||      |  |||| |    ||| |   | || || |  | | |  ||| |||| || || || ||||| |||||||| || || |||||||||||||||||||| || || || |||  |||| | ||||| ||   ||  || || 
gtaatttccaacaaaacacattgaacttttatttggtctgaatgtatgttcttgtatgtgacataaga-tgttgttatggtggttatagTACTTTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGAATGTTTGGTTTTGTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTCTC

upper sequence: EFJ13340 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: Vv06s0061g00150.t01 (Vitis vinifera), 3'ss of exon 2
----------------------gtatgtgattgagaagaaaatcgcatcattg--ttttatt--catgattcttttcttttcattgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACAATCCTG
                        || |  |  |   |    |||  |  |    |||  ||  | |  ||   || | | | ||    |||  ||| ||||| || ||||| ||||||||||| |||||||| ||||| ||||| || |||||||| ||    ||| | ||||| ||   |   ||  | 
gtaattgctacgtgttggttggaaatttcttcaatttggggttcgtgttgtgaaatttagttaacctagttggcttgtgtgcttt-tgaagTATTTTTGGGCCAGTTCAAGATGTGAGGATTCCATACCAGCAGAAGAGGATGTTCGGATTCGTCACTTTCGTCTACCCCGAGACTGTGAAGCTCATTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagaagaaaatcgcatcattgttttattcatgattcttttcttttcattgctcagTTCTTTCGGGCCCGTACAAGACGTGAGGATTCCTTACCAGCAAAAGAGAATGTTTGGCTTCGTCACCTTTACGTACTCGGAGACCGTACGGACAATCCTG
                                 ttcttttcttttcatt  CT-rich tract
              atcattgttttatt  TA-rich tract