Sequence
atgc intronic sequence ATGC exonic sequencegttggttctcatgctcgagtattcgggagttcactctggagcttttatctacagCATATCGAGGTGGCAAAGTTGATGAAGGGACGACCGCTGGACAATTTGGAGTTTATGCAATGGCTGAAACGTTACTGCGATTCTGTCCATGGA
Basic information
species | Selaginella moellendorffii |
transcript | EFJ12535 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ12535 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA11G05560.1 (Glycine max), 3'ss of exon 2
----------------------------------------gttggttctcatgctcgagtattcgggagttcact--ctggagcttt-------tatctacagCATATCGAGGTGGCAAAGTTGATGAAGGGACGACCGCTGGACAATTTGGAGTTTATGCAATGGCTGAAACGTTACTGCGATTCTGTCCATGGA-------
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gtatcactcaacttctctctcgtcttttaatttcatccctgttattctttaattttggacgatcttgatttcagttaccgaattgttcgttgtatattttcagCACATCGAGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCGATTCCGGCCTTC
upper sequence: EFJ12535 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA01G39720.1 (Glycine max), 3'ss of exon 2
--------------------gttggttctc-atgctcgagtattcgggagttcactctggagcttttatctacagCATATCGAGGTGGCAAAGTTGATGAAGGGACGACCGCTGGACAATTTGGAGTTTATGCAATGGCTGAAACGTTACTGCGATTCTGTCCATGGA-------
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gtaacactctccctctgtattttaattttggacgatcttgaattcaattactgaattgctcgttgtgtttctcagCACATCGAGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttggttctcatgctcgagtattcgggagttcactctggagcttttatctacagCATATCGAGGTGGCAAAGTTGATGAAGGGACGACCGCTGGACAATTTGGAGTTTATGCAATGGCTGAAACGTTACTGCGATTCTGTCCATGGA
cttttatct CT-rich tract
ttttatcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggttctcatgctcgagtattcgggagttcactctggagcttttatctacagCATATCGAGGTGGCAAAGTTGATGAAGGGACGACCGCTGGACAATTTGGAGTTTATGCAATGGCTGAAACGTTACTGCGATTCTGTCCATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA