1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttctctctttttctattacgtggctttttcaccctgagctcttgatctccagTTGGAACTCAAGCTGGGACTGGGCGGTTCTTCGTACAAGGATTTTATCCAGATGCTGCATCTTCCGCTCCAGCTCAG
species | Selaginella moellendorffii |
transcript | EFJ12094 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGCCTCATCGCAAGCATCATGCTTTTTGGAGGCCTTCTCGCCCCTTCC TTGGAACTCAAGCTGGGACTGGGCGGTTCTTCGTACAAGGATTTTATCCAGEST: gi|169109658|gb|FE510092.1|FE510092
genomic: TCGGCCTCATCGCAAGCATCATGCTTTTTGGAGGCCTTCTCGCCCCTTCCgtgagttctc ... tgatctccagTTGGAACTCAAGCTGGGACTGGGCGGTTCTTCGTACAAGGATTTTATCCAG
EST: TCGGCCTCATCGCAAGCATCATGCTTTTTGGAGGCCTTCTCGCCCCTTCC TTGGAACTCAAGCTGGGACTGGGCGGTTCTTCGTACAAGGATTTTATCCAG
genomic: TCGGCCTCATCGCAAGCATCATGCTTTTTGGAGGCCTTCTCGCCCCTTCCgtgagttctc ... tgatctccagTTGGAACTCAAGCTGGGACTGGGCGGTTCTTCGTACAAGGATTTTATCCAG
gagttctctctttttctattacgtggctttttcaccctgagctcttgatctccagTTGGAACTCAAGCTGGGACTGGGCGGTTCTTCGTACAAGGATTTTATCCAGATGCTGCATCTTCCGCTCCAGCTCAG
tcttgat putative branch site (score: 7)
ctctt CT-rich tract
tttttctatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctctctttttctattacgtggctttttcaccctgagctcttgatctccagTTGGAACTCAAGCTGGGACTGGGCGGTTCTTCGTACAAGGATTTTATCCAGATGCTGCATCTTCCGCTCCAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA