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gtcattgattcaatctcttgttctggcgaccgagttactgagcttctcctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCACTGGAGAG
species | Selaginella moellendorffii |
transcript | EFJ11911 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAG GTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCEST: gi|169092669|gb|FE496263.1|FE496263
genomic: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAGgtcattgatt ... ctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTC
EST: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAG GTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCEST: gi|169108146|gb|FE512519.1|FE512519
genomic: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAGgtcattgatt ... ctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTC
EST: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAG GTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCEST: gi|169035381|gb|FE444319.1|FE444319
genomic: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAGgtcattgatt ... ctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTC
EST: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAG GTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCEST: gi|169104894|gb|FE509038.1|FE509038
genomic: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAGgtcattgatt ... ctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTC
EST: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAG GTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCEST: gi|169059085|gb|FE468230.1|FE468230
genomic: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAGgtcattgatt ... ctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTC
EST: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAG GTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCEST: gi|169088665|gb|FE491525.1|FE491525
genomic: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAGgtcattgatt ... ctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTC
EST: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAG GTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTC
genomic: ACAGGAGAGGTCAGGTGCTGGAGATCGATGGCGAACGGGCCGTGGTGCAGgtcattgatt ... ctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTC
attgattcaatctcttgttctggcgaccgagttactgagcttctcctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCACTGGAGAG
cattgat putative branch site (score: 20)
cttctcctcttttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattgattcaatctcttgttctggcgaccgagttactgagcttctcctcttttcagGTCTTCGAAGGGACTACTGGAATTGATAACAAGCACACGACTGTTGAGTTCACTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA