1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtcacttagtccgtcctagcaatcaatcgattgtatctcatctcttgtgttttttcctttgtaacagCGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTCCAGCTCTTCCATCACCAAAAACCAGCCGCTACATCCACAGCTCTTCTGC
species | Selaginella moellendorffii |
transcript | EFJ11028 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGAATGTCACACAGTCAGCTCAGCCTAGAGTTCCAATGTGCTTTGATCC CGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTCEST: gi|169103314|gb|FE508864.1|FE508864
genomic: CCGAATGTCACACAGTCAGCTCAGCCTAGAGTTCCAATGTGCTTTGATCCgtaagtcact ... tttgtaacagCGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTC
EST: CCGAATGTCACACAGTCAGCTCAGCCTAGAGTTCCAATGTGCTTTGATCC CGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTCEST: gi|169077320|gb|FE485622.1|FE485622
genomic: CCGAATGTCACACAGTCAGCTCAGCCTAGAGTTCCAATGTGCTTTGATCCgtaagtcact ... tttgtaacagCGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTC
EST: CCGAATGTCACACAGTCAGCTCAGCCTAGAGTTCCAATGTGCTTTGATCC CGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTCEST: gi|169040859|gb|FE447910.1|FE447910
genomic: CCGAATGTCACACAGTCAGCTCAGCCTAGAGTTCCAATGTGCTTTGATCCgtaagtcact ... tttgtaacagCGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTC
EST: CGAATGTCACACAGTCAGCTCAGCCTAGAGTTCCAATGTGCTTTGATCC CGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTC
genomic: CGAATGTCACACAGTCAGCTCAGCCTAGAGTTCCAATGTGCTTTGATCCgtaagtcact ... tttgtaacagCGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTC
gtcctagcaatcaatcgattgtatctcatctcttgtgttttttcctttgtaacagCGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTCCAGCTCTTCCATCACCAAAAACCAGCCGCTACATCCACAGCTCTTCTGC
tatctcatctcttgtg CT-rich tract
tgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcacttagtccgtcctagcaatcaatcgattgtatctcatctcttgtgttttttcctttgtaacagCGATGACAGCTATTTACCTCCCGTGGTCTCCACGGGCATTGGCGCTACCTCCAGCTCTTCCATCACCAAAAACCAGCCGCTACATCCACAGCTCTTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC