1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtttttgcgttttctttgtttttttccccttttttttttttccttttggtagaagtagtgaccctttccggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGCAGTCTTTGACTGCCCTGAAGACGTTCCGGATGAG
species | Selaginella moellendorffii |
transcript | EFJ10940 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACA ATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGCEST: gi|169113336|gb|FE515287.1|FE515287
genomic: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACAgtaagttttt ... cggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGC
EST: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACA ATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGCEST: gi|169041055|gb|FE450355.1|FE450355
genomic: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACAgtaagttttt ... cggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGC
EST: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACA ATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGCEST: gi|169083533|gb|FE495877.1|FE495877
genomic: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACAgtaagttttt ... cggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGC
EST: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACA ATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGCEST: gi|169039555|gb|FE449945.1|FE449945
genomic: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACAgtaagttttt ... cggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGC
EST: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACA ATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGCEST: gi|169106434|gb|FE507446.1|FE507446
genomic: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACAgtaagttttt ... cggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGC
EST: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACA ATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGC
genomic: AATATCTTTGAAACCAGCTTGAGGAGAGGAAAATTCGATGAGTCGAGACAgtaagttttt ... cggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGC
ttccccttttttttttttccttttggtagaagtagtgaccctttccggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGCAGTCTTTGACTGCCCTGAAGACGTTCCGGATGAG
ccctttccggttttt CT-rich tract
ttttttttttttcctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttgcgttttctttgtttttttccccttttttttttttccttttggtagaagtagtgaccctttccggtttttagATTGCCAAATGGATCCTTGTTCGAGATCTCGAAAGTGTACCCCCTGGATGCAGTCTTTGACTGCCCTGAAGACGTTCCGGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA