1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacatattgtgttttatgtcttctttggaaatgctaaaggctttcttgttctcgtcaacagGCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATTATCGTGGTAGCAGCAGATGATGGAACCCGTCCACAGACTTTGGAAGCAA
species | Selaginella moellendorffii |
transcript | EFJ10805 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGATGGGGAGGAGCAAACGTGTGTTTTCCTTGACACACCGGGGCATCAG GCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATTEST: gi|169098616|gb|FE498568.1|FE498568
genomic: TCGATGGGGAGGAGCAAACGTGTGTTTTCCTTGACACACCGGGGCATCAGgtacatattg ... tcgtcaacagGCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATT
EST: TCGATGGGGAGGAGCAAACGTGTGTTTTCCTTGACACACCGGGGCATCAG GCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATTEST: gi|169040032|gb|FE447031.1|FE447031
genomic: TCGATGGGGAGGAGCAAACGTGTGTTTTCCTTGACACACCGGGGCATCAGgtacatattg ... tcgtcaacagGCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATT
EST: TCGATGGGGAGGAGCAAACGTGTGTTTTCCTTGACACACCGGGGCATCAG GCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATT
genomic: TCGATGGGGAGGAGCAAACGTGTGTTTTCCTTGACACACCGGGGCATCAGgtacatattg ... tcgtcaacagGCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATT
ttgtgttttatgtcttctttggaaatgctaaaggctttcttgttctcgtcaacagGCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATTATCGTGGTAGCAGCAGATGATGGAACCCGTCCACAGACTTTGGAAGCAA
tgctaaa putative branch site (score: 30)
ctttcttgttctcgtc putative PPT
ttttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatattgtgttttatgtcttctttggaaatgctaaaggctttcttgttctcgtcaacagGCTTTCAGTGCTATGCGAGCTCGTGGTGCACGAATCACAGACATTGCAATTATCGTGGTAGCAGCAGATGATGGAACCCGTCCACAGACTTTGGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA