1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagctttcttttttatttgtatcatcccgtgctcatcagtctcgctttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCAATTATAGGTCCAAATGGTTGTGGCAAGAGCACCTTACTGCGCCTGATTC
species | Selaginella moellendorffii |
transcript | EFJ10635 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG GTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCAEST: gi|169078770|gb|FE489620.1|FE489620
genomic: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
EST: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG GTTTTGTTCAAAA-GTGCAAACATGAATGTGGAAAGAGGCGAGAAACTTGCEST: gi|169105691|gb|FE508457.1|FE508457
genomic: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAG-GCAAACATGAATGTGGAAAGAGGCGAGAAACTGGC
EST: CGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG GTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCAEST: gi|169115176|gb|FE515605.1|FE515605
genomic: CGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
EST: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG GTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCAEST: gi|70671002|gb|DN839579.1|DN839579
genomic: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCA
EST: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAG GTTTTGTTCAAAA-GTGCAAACATGAATGTGGAAAGAGGCGAGAAACTTGC
genomic: GTCGCATGGTTGCTAGTGTAAAAGATCTCACCCTCCAGTACGGGGAAAAGgttagctttc ... ttgtgtgcagGTTTTGTTCAAAAAG-GCAAACATGAATGTGGAAAGAGGCGAGAAACTGGC
agctttcttttttatttgtatcatcccgtgctcatcagtctcgctttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCAATTATAGGTCCAAATGGTTGTGGCAAGAGCACCTTACTGCGCCTGATTC
tctcgcttt CT-rich tract
ttttttatttgtatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctttcttttttatttgtatcatcccgtgctcatcagtctcgctttgtgtgcagGTTTTGTTCAAAAAGGCAAACATGAATGTGGAAAGAGGCGAGAAACTGGCAATTATAGGTCCAAATGGTTGTGGCAAGAGCACCTTACTGCGCCTGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA