1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttgcaatgttttgcttttcgcctcacattttctaaatttgtttcttcgtcttgtagTGGATTCCGGAGCTGAGACATTATGCTTCTACCGTGCCTGTCATCCTTGTGGGTACAAAGCTGG
species | Selaginella moellendorffii |
transcript | EFJ09765 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCCTTTTCCCTTATCAGCAGGGCGAGCTATGAAAACATCTCGAAGAAG TGGATTCCGGAGCTGAGACATTATGCTTCTACCGTGCCTGTCATCCTTGTGEST: gi|169034529|gb|FE444576.1|FE444576
genomic: TGGCCTTTTCCCTTATCAGCAGGGCGAGCTATGAAAACATCTCGAAGAAGgttgcaatgt ... cgtcttgtagTGGATTCCGGAGCTGAGACATTATGCTTCTACCGTGCCTGTCATCCTTGTG
EST: TGGCCTTTTCCCTTATCAGCAGGGCCAGCTATGAAAACATCTCGAAGAAG TGGATTCCGGAGCTGAGACATTATGCTTCTACCGTGCCTGTCATCCTTGTG
genomic: TGGCCTTTTCCCTTATCAGCAGGGCGAGCTATGAAAACATCTCGAAGAAGgttgcaatgt ... cgtcttgtagTGGATTCCGGAGCTGAGACATTATGCTTCTACCGTGCCTGTCATCCTTGTG
tgcaatgttttgcttttcgcctcacattttctaaatttgtttcttcgtcttgtagTGGATTCCGGAGCTGAGACATTATGCTTCTACCGTGCCTGTCATCCTTGTGGGTACAAAGCTGG
ttctaaa putative branch site (score: 11)
tttgtttcttcgtctt CT-rich tract
attttctaaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcaatgttttgcttttcgcctcacattttctaaatttgtttcttcgtcttgtagTGGATTCCGGAGCTGAGACATTATGCTTCTACCGTGCCTGTCATCCTTGTGGGTACAAAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG