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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttttttcttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCTCCTGAATTTA

Basic information

species Selaginella moellendorffii
transcript EFJ09564
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ09564 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
gtaagtttttttttcttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAA---GAGCCCTCCTGAATTTA--------------------------------------------------------------------------------------------------------------------------------
    ||  ||  |  |                                                                                                       |   || ||   ||        | | |  | ||    |     |  |||   ||                                                                                                                                
----gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT

upper sequence: EFJ09564 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------gtaagtttttttttct---tttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCC--TCCTGAATTTA
                             | ||| |||| |||   ||||  |   |   |   ||||   |   |  |||   |   |   || | ||||| ||||| ||| ||| |||||| |||||||| || ||||| ||||| ||||||||||| || || ||  | ||  | || ||||  ||  | |   |||  
tatgatcactggaaattccgataatcaaaatgttattttatctgcatttgccttcttaagagaactttcatagagtcaaattgctgcataatctctgtagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTTTATAACGCTAATTTGGGGATCACAAAGAAGCCGGTGCCAGATT--

upper sequence: EFJ09564 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: PP1S2_337V6.1 (Physcomitrella patens), 3'ss of exon 4
----------------------------------gtaagtttttttttcttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCC---TCCTGAATTTA
                                  || |   | |   | |  |  ||  |||  |     |||  |  |  ||||  |  ||  ||      |||| || |||||| | |||||||| |||||||| |||||||| || || || ||||||||||| || ||| ||||| | || ||||  ||   |||||| |   
atttagcgctgattaaagaagccgacctttcaacgtcatcatatgcctttcattcgtaactccaagtatcttgccaaatgctaatactaggtaatatc----agGTGCAGGCCTACTTATTTGATGGCTACTGGGAAGATATTGGAACTATTGAAGCTTTTTACAACGCAAACTTAGGAATCACGAAGAAGCCCGTTCCTGATT---


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCTCCTGAATTTA
                             ttttaat  putative branch site (score: 3)
                                   tcttttgttctacttt  CT-rich tract
                    tttgtgattttttaat  TA-rich tract