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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacggtagagatggctgaaattcggtctcgtagctcatgtcgtgagaggttgctgtttggtgcagTTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTCCAAGAAAGCCATAATAAAAAACAATGACTTCGGGACATCAGATGACGAAGATGGCAG

Basic information

species Selaginella moellendorffii
transcript EFJ09297
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169060107|gb|FE468093.1|FE468093
EST:     TCTTCACACGCTCATGGCTCAGTTCTTGTTTGTGTTTCTGAGTGGTGCCG                         TTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTCCAAGAAAG
genomic: TCTTCACACGCTCATGGCTCAGTTCTTGTTTGTGTTTCTGAGTGGTGCCGgtaagacggt ... tttggtgcagTTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTCCAAGAAAG
EST: gi|169060106|gb|FE468092.1|FE468092
EST:     TCACACGCTCATGGCTCAGTTCTTGTTTGTGTTTCTGAGTGGTGCCG                         TTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTCCAAGAAAG
genomic: TCACACGCTCATGGCTCAGTTCTTGTTTGTGTTTCTGAGTGGTGCCGgtaagacggt ... tttggtgcagTTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTCCAAGAAAG
EST: gi|169061802|gb|FE470720.1|FE470720
EST:     TCTTCACACGCTCATGGCTCAGTTCTTGTTTGTGTTTCTGAGTGGTGCCG                         TTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTC
genomic: TCTTCACACGCTCATGGCTCAGTTCTTGTTTGTGTTTCTGAGTGGTGCCGgtaagacggt ... tttggtgcagTTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggctgaaattcggtctcgtagctcatgtcgtgagaggttgctgtttggtgcagTTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTCCAAGAAAGCCATAATAAAAAACAATGACTTCGGGACATCAGATGACGAAGATGGCAG
     tgaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagacggtagagatggctgaaattcggtctcgtagctcatgtcgtgagaggttgctgtttggtgcagTTTTCGCTCGTATGTCACAGCCAGCGCATCCCATAAGGTGCTCCAAGAAAGCCATAATAAAAAACAATGACTTCGGGACATCAGATGACGAAGATGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG