1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttgtctaggctagctctctggatcgatggagattctaacagcttgtttgctacgtgtagATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAAGAGCGTGTTTGGAGAGGACGCGCTGGTGAATGTGAGCGTGGAGAAGATG
species | Selaginella moellendorffii |
transcript | EFJ09162 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCGCC ATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAAEST: gi|169055890|gb|FE465104.1|FE465104
genomic: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACCgtaagttgtc ... ctacgtgtagATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAA
EST: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACC ATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAAEST: gi|169059432|gb|FE468055.1|FE468055
genomic: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACCgtaagttgtc ... ctacgtgtagATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAA
EST: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACC ATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAAEST: gi|169020791|gb|FE429256.1|FE429256
genomic: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACCgtaagttgtc ... ctacgtgtagATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAA
EST: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACC ATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAAEST: gi|169028236|gb|FE434048.1|FE434048
genomic: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACCgtaagttgtc ... ctacgtgtagATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAA
EST: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACC ATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAA
genomic: TTCCTGGATCACATCGTCACCTCCACAAACATGAAATGCTTGACTCCACCgtaagttgtc ... ctacgtgtagATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAA
ctaggctagctctctggatcgatggagattctaacagcttgtttgctacgtgtagATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAAGAGCGTGTTTGGAGAGGACGCGCTGGTGAATGTGAGCGTGGAGAAGATG
ttctaac putative branch site (score: 23)
attctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtctaggctagctctctggatcgatggagattctaacagcttgtttgctacgtgtagATCGCAACTGGATGGAGATTGTGGGTTTTTGGCAGCCAATCTCTACGCCAAGAGCGTGTTTGGAGAGGACGCGCTGGTGAATGTGAGCGTGGAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG