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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaaacctttactttttcttctcgtgaatcgctaaagctctttctttcactgttacagGTGCTAGAAAATTTCCCCAAGGATTTAGCATCACTCAAACGTGCACAAGCTATGGCTTTCTCGAGGGGAAAGTCTCACTTGATGCTCAAATTTGCCTCTC

Basic information

species Selaginella moellendorffii
transcript EFJ07610
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169108891|gb|FE512302.1|FE512302
EST:     ACGCAATCGCTGAAGGTTCTTATGACAAGGCCCTTTCCTCCCAATCAAAG                         GTGCTAGAAAATTTCCCCAAGGATTTAGCATCACTCAAACGTGCACAAGGT
genomic: ACGCAATCGCTGAAGGTTCTTATGACAAGGCCCTTTCGTCCCAATCAAAGgtcaaaacct ... actgttacagGTGCTAGAAAATTTCCCCAAGGATTTAGCATCACTCAAACGTGCACAAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacctttactttttcttctcgtgaatcgctaaagctctttctttcactgttacagGTGCTAGAAAATTTCCCCAAGGATTTAGCATCACTCAAACGTGCACAAGCTATGGCTTTCTCGAGGGGAAAGTCTCACTTGATGCTCAAATTTGCCTCTC
                          cgctaaa  putative branch site (score: 3)
                                  ctctttctttcactgt  CT-rich tract
     ttacttttt  TA-rich tract