1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagaggcttaagtttacgattcgaggatccctattgaaattttttactcagGTGGGACATGGTAGCCGCAGTGATGTTACAATGCTTCCTACATTGATCATCAATAATAGGCAGTATAGAGGGAAGCTAGACAAAGGAGCGGTGCTGAAAG
species | Selaginella moellendorffii |
transcript | EFJ06539 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAACAAGATGCGCAG GTGGGACATGGTAGCCGCAGTGATGTTACAATGCTTCCTACATTGATCATNEST: gi|169082333|gb|FE489506.1|FE489506
genomic: CTGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAACAAGATGCGCAGgtaagaggct ... ttttactcagGTGGGACATGGTAGCCGCAGTGATGTTACAATGCTTCCTACATTGATCAT-
EST: TGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAAACA-GATGCGCAG GTGGGACATGGTAGCCGCAGTGATGTTACAATGCTTCCTACATTGATCEST: gi|169081933|gb|FE486428.1|FE486428
genomic: TGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAA-CAAGATGCGCAGgtaagaggct ... ttttactcagGTGGGACATGGTAGCCGCAGTGATGTTACAATGCTTCCTACATTGATC
EST: CTGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAACAAGATGCGCAG GTGGGACATGGTAGCCG
genomic: CTGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAACAAGATGCGCAGgtaagaggct ... ttttactcagGTGGGACATGGTAGCCG
gtaagaggcttaagtttacgattcgaggatccctattgaaattttttactcagGTGGGACATGGTAGCCGCAGTGATGTTACAATGCTTCCTACATTGATCATCAATAATAGGCAGTATAGAGGGAAGCTAGACAAAGGAGCGGTGCTGAAAG
ttttttactc CT-rich tract
tattgaaattttttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaggcttaagtttacgattcgaggatccctattgaaattttttactcagGTGGGACATGGTAGCCGCAGTGATGTTACAATGCTTCCTACATTGATCATCAATAATAGGCAGTATAGAGGGAAGCTAGACAAAGGAGCGGTGCTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG