1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaacacgttagttagcttggagcttctcatctcttctcaccttgatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGATCAACGAAGTGGAAGGCCTCCACAGGCTGACGAAGCTCTCGTGCCTGGA
species | Selaginella moellendorffii |
transcript | EFJ06475 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAG GACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGAEST: gi|169057689|gb|FE465183.1|FE465183
genomic: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAGgtaacacgtt ... gatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGA
EST: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAG GACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGAEST: gi|169093843|gb|FE494783.1|FE494783
genomic: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAGgtaacacgtt ... gatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGA
EST: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAG GACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGAEST: gi|169110272|gb|FE513409.1|FE513409
genomic: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAGgtaacacgtt ... gatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGA
EST: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAG GACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGAEST: gi|169115482|gb|FE516223.1|FE516223
genomic: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAGgtaacacgtt ... gatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGA
EST: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAG GACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGAEST: gi|169058639|gb|FE466848.1|FE466848
genomic: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAGgtaacacgtt ... gatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGA
EST: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAG GACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGA
genomic: GCTACGCTCGTTAAACCTCTCGTACAACAGGATCCTGCGAATCGGACAAGgtaacacgtt ... gatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGA
gtaacacgttagttagcttggagcttctcatctcttctcaccttgatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGATCAACGAAGTGGAAGGCCTCCACAGGCTGACGAAGCTCTCGTGCCTGGA
cttctcatctcttctc CT-rich tract
ttagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacgttagttagcttggagcttctcatctcttctcaccttgatcttccagGACTGGCAAACTGTACCTCCATACGCGAGCTTTACCTGGCTTGCAACAAGATCAACGAAGTGGAAGGCCTCCACAGGCTGACGAAGCTCTCGTGCCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG