1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgcaaactcgctttaatcattctaggctaacgtttcttcctgttgggcttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGGACAAGAGATACAAAAACCGGGAGCTGCAAATAATGCGCCTTCTTGACC
species | Selaginella moellendorffii |
transcript | EFJ04915 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGEST: gi|169034065|gb|FE442799.1|FE442799
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTAGGAACTGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCCATCAAGAAGGTGTTACAGEST: gi|169036066|gb|FE446772.1|FE446772
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTATGAACCGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGEST: gi|169111672|gb|FE511910.1|FE511910
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTAGGAACTGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCCATCAAGAAGGTGTTACAGEST: gi|169051268|gb|FE457618.1|FE457618
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTAGGAACTGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCCATCAAGAAGGTGTTACAGEST: gi|169020214|gb|FE430317.1|FE430317
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGEST: gi|169046998|gb|FE454570.1|FE454570
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTAGGAACTGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCCATCAAGAAGGTGTTACAGEST: gi|169054529|gb|FE462613.1|FE462613
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTAGGAACTGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCCATCAAGAAGGTGTTACAGEST: gi|169057379|gb|FE466814.1|FE466814
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGEST: gi|169051816|gb|FE458998.1|FE458998
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
EST: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAG GCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
genomic: ATGTCGCGGAACGTGTTGTAGGAACCGGATCGTTTGGCATCGTCTTCCAGgtgtgcaaac ... ttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAG
aaactcgctttaatcattctaggctaacgtttcttcctgttgggcttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGGACAAGAGATACAAAAACCGGGAGCTGCAAATAATGCGCCTTCTTGACC
ggctaac putative branch site (score: 26)
cttcacttt putative PPT
tttaatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcaaactcgctttaatcattctaggctaacgtttcttcctgttgggcttcactttagGCCAAGTGCCTCGAAACAGGAGAGACGGTGGCTATCAAGAAGGTGTTACAGGACAAGAGATACAAAAACCGGGAGCTGCAAATAATGCGCCTTCTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC