1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtgtgaatgagttcttttatttttcaaaggtcttaagtttccaagtttctaagtttgctcggtggctttaaaatttgaagATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGCGATGAAGCAGCTCAAGCTCTCATGCATCCAAACTTGAAGCTCTTGCTAG
species | Selaginella moellendorffii |
transcript | EFJ04455 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCGCGCACAGGCATCAAAAGCATTTGGAACGAAGCCGATATCATCAAG ATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGCEST: gi|169056127|gb|FE465679.1|FE465679
genomic: CTGCGCGCACAGGCATCAAAAGCATTTGGAACGAAGCCGATATCATCAAGgtttgtgtga ... aaatttgaagATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGC
EST: CTGCGCGCACAGGCATCAAAAGCATTTGGAACGAAGCCGATATCATCAAG ATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGCEST: gi|169062987|gb|FE472945.1|FE472945
genomic: CTGCGCGCACAGGCATCAAAAGCATTTGGAACGAAGCCGATATCATCAAGgtttgtgtga ... aaatttgaagATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGC
EST: CTGCTCGCACAGGCATCAAAAGCATTTGGAACGAAGCCGATATCATCAAG ATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGC
genomic: CTGCGCGCACAGGCATCAAAAGCATTTGGAACGAAGCCGATATCATCAAGgtttgtgtga ... aaatttgaagATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGC
aaaggtcttaagtttccaagtttctaagtttgctcggtggctttaaaatttgaagATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGCGATGAAGCAGCTCAAGCTCTCATGCATCCAAACTTGAAGCTCTTGCTAG
tttaaaatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtgaatgagttcttttatttttcaaaggtcttaagtttccaagtttctaagtttgctcggtggctttaaaatttgaagATAAGTGAGGAGGAGATCACATTTCTAACTGAAGGAGGTGACCCTTACAGCGATGAAGCAGCTCAAGCTCTCATGCATCCAAACTTGAAGCTCTTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC