1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagtgagtgcctcactctcatgctttcctgttcattaaagttcctgtttttccagttttattgttaatccaaagtggaagtttagctctttgtttcacagGTTTATAAAGCTGACCTACCCAAGAGAGTTCACAAGTCAGAGTCACGTCTCCAACTAGAGGCTTAA
species | Selaginella moellendorffii |
transcript | EFJ04328 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gtttttccagttttattgttaatccaaagtggaagtttagctctttgtttcacagGTTTATAAAGCTGACCTACCCAAGAGAGTTCACAAGTCAGAGTCACGTCTCCAACTAGAGGCTTAA
tgttaat putative branch site (score: 3)
ctctttgtttc putative PPT
agttttattgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgagtgcctcactctcatgctttcctgttcattaaagttcctgtttttccagttttattgttaatccaaagtggaagtttagctctttgtttcacagGTTTATAAAGCTGACCTACCCAAGAGAGTTCACAAGTCAGAGTCACGTCTCCAACTAGAGGCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - -tcactct
- - - - - - - - - - tgctttc
- - - - - - - - - - - - - - tgttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagctc