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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctcctctcatctttctggattgacgcgagagttctttgtgtctttgttcttccagGATGTATGATCGAGAGTGGGAGGAAGAAAAGAGGCAGCGCGCAGAGCTCAAGAGAAGACACCATAGAAAGTAAACTTAAGGCCTACAGTTTTACGGTTTT

Basic information

species Selaginella moellendorffii
transcript EFJ25405
intron # 29
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169033568|gb|FE442120.1|FE442120
EST:     CCACCTCTCAAAGACGTTCCTTCCAAGCTTACTCGCCGCGACCACGAACA                         GATGTATGATCGAGAGTGGGAGGAAGAAAAGAGGCAGCGCGCAGAGCTCAA
genomic: CCACCTCTTAAAGACGTTCCTTCCAAGCTTACTCGCCGCGACCACGAACAgtgagttctc ... gttcttccagGATGTATGATCGAGAGTGGGAGGAAGAAAAGAGGCAGCGCGCAGAGCTCAA
EST: gi|169083333|gb|FE491377.1|FE491377
EST:     CCACCTCTTAAAGACGTTCCTTCCAAGCTTACTCGCCGCGACCACGAACA                         GATGTATGATCGAGAGTGGGAGGAAGAAAAGAGGCAGCGCGCAGAGCTCAA
genomic: CCACCTCTTAAAGACGTTCCTTCCAAGCTTACTCGCCGCGACCACGAACAgtgagttctc ... gttcttccagGATGTATGATCGAGAGTGGGAGGAAGAAAAGAGGCAGCGCGCAGAGCTCAA
EST: gi|169077945|gb|FE489848.1|FE489848
EST:     CCACCTCTCAAAGACGTTCCTTCCAAGCTTACTCGCCGCGACCACGAACA                         GATGTATGATCGAGAGTGGGAGGAAGAAAAGAGGCAGCGCGCAGAGCTCAA
genomic: CCACCTCTTAAAGACGTTCCTTCCAAGCTTACTCGCCGCGACCACGAACAgtgagttctc ... gttcttccagGATGTATGATCGAGAGTGGGAGGAAGAAAAGAGGCAGCGCGCAGAGCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctctcatctttctggattgacgcgagagttctttgtgtctttgttcttccagGATGTATGATCGAGAGTGGGAGGAAGAAAAGAGGCAGCGCGCAGAGCTCAAGAGAAGACACCATAGAAAGTAAACTTAAGGCCTACAGTTTTACGGTTTT
                 gattgac  putative branch site (score: 3)
                               ttctttgtgtctttgt  putative PPT