1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' |
gtacgtttcttcatcaatggtttgtgaatgattgtgagcttatttgaatgacagGGTCATTTTGAGGAAGGGCTCCTTGCTCGTCAGCAAGCGATTGAGAACGTGAAGTCGGCTGCAAAGGCTTCTCGTGGAAAGAGTCCATCTGAAAAGCTGA
species | Selaginella moellendorffii |
transcript | EFJ18188 |
intron # | 29 |
splice site | 3' |
intron type | U2 |
EST: GAAATCTTGAGCGTGCTAAG GGTCA-TTTGAGGAAGGGCTCCTTGCTCGTCAGCAAGCGATTGAGAACGTGEST: gi|169083629|gb|FE494855.1|FE494855
genomic: GAAATCTTGAGCGTGCTAAGgtacgtttct ... tgaatgacagGGTCATTTTGAGGAAGGGCTCCTTGCTCGTCAGCAAGCGATTGAGAACGTG
EST: AAATCTTGAGCGTGCTAAG GGTCA-TTTGAGGGAAAGGGCTCCTTGCTCGTCAGCAAGCGATTGAGAACG
genomic: AAATCTTGAGCGTGCTAAGgtacgtttct ... tgaatgacagGGTCATTTTGA-GG-AAGGGCTCCTTGCTCGTCAGCAAGCGATTGAGAACG
gtacgtttcttcatcaatggtttgtgaatgattgtgagcttatttgaatgacagGGTCATTTTGAGGAAGGGCTCCTTGCTCGTCAGCAAGCGATTGAGAACGTGAAGTCGGCTGCAAAGGCTTCTCGTGGAAAGAGTCCATCTGAAAAGCTGA
cttattt CT-rich tract
ttatttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttcttcatcaatggtttgtgaatgattgtgagcttatttgaatgacagGGTCATTTTGAGGAAGGGCTCCTTGCTCGTCAGCAAGCGATTGAGAACGTGAAGTCGGCTGCAAAGGCTTCTCGTGGAAAGAGTCCATCTGAAAAGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA