1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gtgagcaagatcttttcgctttccgtgttttggaatctaactcgtggcgaatctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCGCTCGAGAGCTTAACCTCGAGGCTGCGATCCGTCCGCTTAACCTGCCCT
species | Selaginella moellendorffii |
transcript | EFJ32221 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA GATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169103234|gb|FE506353.1|FE506353
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA CATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169053589|gb|FE463332.1|FE463332
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA CATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169103498|gb|FE508918.1|FE508918
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA GATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169103235|gb|FE506354.1|FE506354
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA CATGCAGGAGTAEST: gi|169077279|gb|FE485165.1|FE485165
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTA
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA CATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169073532|gb|FE482648.1|FE482648
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: GCTTCGGGGACGAGATGGTGGTGAAAAA GATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169030419|gb|FE438675.1|FE438675
genomic: GCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA GATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169072369|gb|FE480255.1|FE480255
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA GATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169039007|gb|FE448255.1|FE448255
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA GATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169043586|gb|FE452667.1|FE452667
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA CATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169072368|gb|FE480254.1|FE480254
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA GATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCEST: gi|169077278|gb|FE485164.1|FE485164
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
EST: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAA CATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
genomic: ATGTCACTGTGCTATGCTGCCGGCTTCGGGGACGAGATGGTGGTGAAAAAgtgagcaaga ... tctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGC
aagatcttttcgctttccgtgttttggaatctaactcgtggcgaatctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCGCTCGAGAGCTTAACCTCGAGGCTGCGATCCGTCCGCTTAACCTGCCCT
aatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaagatcttttcgctttccgtgttttggaatctaactcgtggcgaatctaatccagGATGCAGGAGTACGAAGACAGGGCTGTGATGCTTGCAGAGAATCCAAAAGCGCTCGAGAGCTTAACCTCGAGGCTGCGATCCGTCCGCTTAACCTGCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT