1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
gtttgaggatccttgctttttcttgtgatcttttaacatggaagacactgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACAAGAAAGCAGGAAGATGGCGCCAGTCTGTTGCGCTGTCCAAGAAGGACA
species | Selaginella moellendorffii |
transcript | EFJ24508 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAG CTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACEST: gi|169032179|gb|FE438786.1|FE438786
genomic: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAGgtttgaggat ... tgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTAC
EST: AATCCATCGATCTTCACGACAATTTTGATCAAATTTCTTTGGCACAAAAG CTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACEST: gi|169045877|gb|FE451733.1|FE451733
genomic: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAGgtttgaggat ... tgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTAC
EST: TTGGCACAAAAG CTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACEST: gi|169097271|gb|FE497648.1|FE497648
genomic: TTGGCGCAAAAGgtttgaggat ... tgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTAC
EST: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAG CTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACEST: gi|169030494|gb|FE438698.1|FE438698
genomic: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAGgtttgaggat ... tgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTAC
EST: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAG CTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACEST: gi|169114798|gb|FE516059.1|FE516059
genomic: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAGgtttgaggat ... tgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTAC
EST: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAG CTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACEST: gi|169047381|gb|FE456214.1|FE456214
genomic: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAGgtttgaggat ... tgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTAC
EST: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAG CTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTAC
genomic: AATCCATTGATCTTCACGACAATTTTGATCAAATTTCTTTGGCGCAAAAGgtttgaggat ... tgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTAC
tgaggatccttgctttttcttgtgatcttttaacatggaagacactgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACAAGAAAGCAGGAAGATGGCGCCAGTCTGTTGCGCTGTCCAAGAAGGACA
ttttaac putative branch site (score: 13)
ctgtttt putative PPT
atcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaggatccttgctttttcttgtgatcttttaacatggaagacactgttttgcagCTTGAAAAGCACGAGCTTATCGAATTGCGCCGCGTCTCTGCCTACATTTACAAGAAAGCAGGAAGATGGCGCCAGTCTGTTGCGCTGTCCAAGAAGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG