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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatctctttttgttggcagtgtcacgcactttgattacagGTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTGGGTACTCCGGATACAAGCGTTGCCCTGGA

Basic information

species Selaginella moellendorffii
transcript EFJ21842
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169057928|gb|FE465526.1|FE465526
EST:     ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTG                         GTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
genomic: ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTGgtaagctatc ... ttgattacagGTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
EST: gi|169081057|gb|FE490763.1|FE490763
EST:     ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTG                         GTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
genomic: ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTGgtaagctatc ... ttgattacagGTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
EST: gi|169109858|gb|FE513905.1|FE513905
EST:     ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTG                         GTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
genomic: ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTGgtaagctatc ... ttgattacagGTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
EST: gi|169099524|gb|FE500529.1|FE500529
EST:     ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTG                         ATAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
genomic: ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTGgtaagctatc ... ttgattacagGTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
EST: gi|169094037|gb|FE494041.1|FE494041
EST:     ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTG                         ATAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG
genomic: ACATCGTTGGTGCGGCAACTTACTTTTCGGAAAACCCGACTCTATGCTTGgtaagctatc ... ttgattacagGTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagctatctctttttgttggcagtgtcacgcactttgattacagGTAAGGATTGAAACCGATCCGGCAGATCGGACCCAAATAAGACTCACAGTGGGTACTCCGGATACAAGCGTTGCCCTGGA
                                           ctttgat  putative branch site (score: 5)
                              tttttgtt  TA-rich tract