1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' |
gtaagttgacgtttattctactatcttgtactgacgtgtactgacttgcagTCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTTGCATGCCGTTTTTGAGCTTGAAGCTCTTATGATAACAG
species | Selaginella moellendorffii |
transcript | EFJ07070 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CTTAATCTAGATGTACCCGAGCCATGGCTTGTAGAGCCTGTCGTGGCTAT TCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTTEST: gi|169099839|gb|FE500844.1|FE500844
genomic: CTTAATCTAGATGTACCCGAGCCATGGCTTGTAGAGCCTGTCGTGGCTATgtaagttgac ... tgacttgcagTCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTT
EST: CTTAATCTAGATGTACCCGAGCCATGGCTTGTAGAGCCTGTCGTGGCTAT TCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTTEST: gi|169031012|gb|FE439840.1|FE439840
genomic: CTTAATCTAGATGTACCCGAGCCATGGCTTGTAGAGCCTGTCGTGGCTATgtaagttgac ... tgacttgcagTCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTT
EST: CTTAATCTAGATGTACCCGAGCCATGGCTTGTAGAGCCTGTCGTGGCTAT TCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTTEST: gi|169114730|gb|FE516927.1|FE516927
genomic: CTTAATCTAGATGTACCCGAGCCATGGCTTGTAGAGCCTGTCGTGGCTATgtaagttgac ... tgacttgcagTCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTT
EST: CTTAATCTAGATGTACCCGAGCCATGGCTTGTAGAGCCTGTCGTGGCTAT TCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTT
genomic: CTTAATCTAGATGTACCCGAGCCATGGCTTGTAGAGCCTGTCGTGGCTATgtaagttgac ... tgacttgcagTCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTT
gtaagttgacgtttattctactatcttgtactgacgtgtactgacttgcagTCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTTGCATGCCGTTTTTGAGCTTGAAGCTCTTATGATAACAG
tactgac putative branch site (score: 13)
tttattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgacgtttattctactatcttgtactgacgtgtactgacttgcagTCATGACCTGGATAATATTGTTTTGGAAAAGCTCGACGATGAAAGAACTTTGCATGCCGTTTTTGAGCTTGAAGCTCTTATGATAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC