1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtaagtgcttacgtttttagcgggctattataatcatttttgtttctgctcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAACCGAGCCTTGTGAAGGAGCTGCTACCTGTGCTCTTTCCGCTTCTGTATG
species | Selaginella moellendorffii |
transcript | EFJ33911 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TCAAGCTTTGCATCTCTTCTTTTCTTATGCTTATCAAAGACGGAGATAGA CATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAAEST: gi|169083461|gb|FE495860.1|FE495860
genomic: TCAAGCTTTGCATCTCTTCTTTTCTTATGCTTATCAAAGACGGAGATAGAgtaagtgctt ... tcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAA
EST: TATGC-TATCAAAAGACGGAGATAGA CATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAAEST: gi|169027166|gb|FE435063.1|FE435063
genomic: TATGCTTATC-AAAGACGGAGATAGAgtaagtgctt ... tcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAA
EST: TCAAGCTTTGCATCTCTTCTTTTCTTATGCTTATCAAAGACGGAGATAGA CATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAAEST: gi|169095773|gb|FE498893.1|FE498893
genomic: TCAAGCTTTGCATCTCTTCTTTTCTTATGCTTATCAAAGACGGAGATAGAgtaagtgctt ... tcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAA
EST: TCAAGCTTTGCATCTCTTCTTTTCTTATGCTTATCAAAGACGGAGATAGA CATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAAEST: gi|169027307|gb|FE436166.1|FE436166
genomic: TCAAGCTTTGCATCTCTTCTTTTCTTATGCTTATCAAAGACGGAGATAGAgtaagtgctt ... tcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAA
EST: CAAGCTTTGCATCTCTTCTTTTCTTATGC-TANTCAAAGACGGAGATAGA CATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAAEST: gi|169021627|gb|FE428844.1|FE428844
genomic: CAAGCTTTGCATCTCTTCTTTTCTTATGCTTA-TCAAAGACGGAGATAGAgtaagtgctt ... tcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAA
EST: TATGCTTATCAAAGACGGAGATAGA CATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAA
genomic: TATGCTTATCAAAGACGGAGATAGAgtaagtgctt ... tcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAA
gtgcttacgtttttagcgggctattataatcatttttgtttctgctcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAACCGAGCCTTGTGAAGGAGCTGCTACCTGTGCTCTTTCCGCTTCTGTATG
tgcttac putative branch site (score: 16)
tttttgtttctgctc putative PPT
tattataatcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcttacgtttttagcgggctattataatcatttttgtttctgctcgaatgcagCATGTGAGACGGGCTGCAGTTTCGGCTTTGAGCACTGCTGGGCACAACAAACCGAGCCTTGTGAAGGAGCTGCTACCTGTGCTCTTTCCGCTTCTGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT