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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattgtaacctgtgtttccaggttttctgacccggaattgctgacagGCGCGACTCTTCTTCCATCATCCGAAGTTTGGAATTCTGGACGAATGCACCAA

Basic information

species Selaginella moellendorffii
transcript EFJ33165
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ33165 (Selaginella moellendorffii), 3'ss of exon 22
lower sequence: GRMZM2G060045_T01 (Zea mays), 3'ss of exon 22
-------------------------------------gtattattgtaacctgtgtttccaggttttctgacccggaattgctgacagGCGCGACTCTTCTTCCATCATCCGAAGTTTGGAATTCTGGACGAATGCACCAA
                                      | |  || ||  |  | ||    |        | |      |  ||  |||| ||  | || ||||||||||| |||||||| || |||||||| ||||||||
gtcggtattaactggcagagcacatctatttgttcctttttcgttctatacgctattaagtgaaaagtcaatctcttccttttgctagGCTCGTTTGTTTTTCCATCATCCTAAGTTTGGTATCCTGGACGAGTGCACCAA

upper sequence: EFJ33165 (Selaginella moellendorffii), 3'ss of exon 22
lower sequence: PP1S150_142V6.1 (Physcomitrella patens), 3'ss of exon 24
----------------------------------------------------------------------------------------------------------------------------gtattattgtaacctgtgtttc-caggttttctgacccggaa-----ttgctgacagGCGCGACTCTTCTTCCATCATCCGAAGTTTGGAATTCTGGACGAATGCACCAA
                                                                                                                             |    |  | | ||   ||   || |  |||| ||     |      ||   |||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||||||
gtaagttcatgaaccggaaattgcgaggttttgtgaggatcgaaaacagatcacgagacttcgaactttaagacgtcttttttgaagatttttgaagatttacgtctaaggttgatttacagtcattcactgatcatctaccttcagcaagggttcttactaattagttggctgtcaacagGCACGACTATTCTTCCATCATCCCAAGTTTGGAATTCTTGACGAGTGCACCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattattgtaacctgtgtttccaggttttctgacccggaattgctgacagGCGCGACTCTTCTTCCATCATCCGAAGTTTGGAATTCTGGACGAATGCACCAA
                                ttctgac  putative branch site (score: 2)
         tattattgtaa  TA-rich tract