1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gttcggttcggcgagatctgaatgcctgaaaaccaatcaacaatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTACGGTCTTCCGGAAGATAAGTTTATATTTGCATGTTTCAACCAGCTGTACA
species | Selaginella moellendorffii |
transcript | EFJ32221 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TCCACACTGCTACTTTGTCAACGATTATAAGCAG AAAAATCGGGACGTATTGGATAGTACGAATTTGCCCAAGCGATCGGACTACEST: gi|169077179|gb|FE485065.1|FE485065
genomic: TCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTAC
EST: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAG AAAAATCGGGACGTATTGGATAGTACGAATTTGCC-AAGCGATCGGACTEST: gi|169103235|gb|FE506354.1|FE506354
genomic: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACT
EST: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAG AAAAATCGGGACGTATTGGATAGTACGAATTTGCCCAAGCGATCGGACTACEST: gi|169077279|gb|FE485165.1|FE485165
genomic: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTAC
EST: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAG AAAAATCGGGACGTATTGGATAGTACGAATTTGCCCAAGCGATCGGACTACEST: gi|169043586|gb|FE452667.1|FE452667
genomic: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTAC
EST: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAG AAAAATCGGGACGTATTGGATAGTACGAATTTGCCCAAGCGATCGGACTACEST: gi|169077278|gb|FE485164.1|FE485164
genomic: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTAC
EST: TCCACACTGCTACTTGGTCAACGATTATAAGCAG AAAAATCGGGACGTATTGGATAGTACGAATTTGCNCAAGCGATCGGACTACEST: gi|169050498|gb|FE459605.1|FE459605
genomic: TCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTAC
EST: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAG AANAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTACEST: gi|169039008|gb|FE448256.1|FE448256
genomic: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTAC
EST: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAG AAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTACEST: gi|169032089|gb|FE437994.1|FE437994
genomic: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTAC
EST: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAG AAAAATCGGGACGTATTGGATAGTACGAATTTGCCCAAGCGATCGGACTAC
genomic: AAAAGCTTGTGCATCTTCCACACTGCTACTTTGTCAACGATTATAAGCAGgttcggttcg ... aatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTAC
gttcggttcggcgagatctgaatgcctgaaaaccaatcaacaatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTACGGTCTTCCGGAAGATAAGTTTATATTTGCATGTTTCAACCAGCTGTACA
tctttc CT-rich tract
aatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcggttcggcgagatctgaatgcctgaaaaccaatcaacaatctttcagAAAAATCGGGACGTATTGGATAGTACCAATTTGCCCAAGCGATCGGACTACGGTCTTCCGGAAGATAAGTTTATATTTGCATGTTTCAACCAGCTGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG