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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcgggttcttcacattttctcaccacctctagccggtttgttccgcagTTGTGCTTGAGAATTTTGATCAAGTCGCAGGAGACTGCTTTATGGATTGCGTCAACTGTCTTATGGCTTTTGCGAACAACAAAACTAGCTCTCGAATAAG

Basic information

species Selaginella moellendorffii
transcript EFJ20775
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20775 (Selaginella moellendorffii), 3'ss of exon 21
lower sequence: GRMZM2G335287_T01 (Zea mays), 3'ss of exon 22
------------------------------------------------------gtaggcgggttcttcacattttctcaccacctctagccggtt------tgttccgcagTTGTGCTTGAGAATTTTGATCAAGTCGCAGGAGACTGCTTTATGGATTGCGTCAACTGTCTTATGGCTTTTGCGAACAACAAAACTAGCTCTCGAATAAG
                                                       ||       |||| | ||||| |   |     | |    |       |||    ||||| |  | ||  |||||||||||||||  || || ||||| |||||||| |||||||||||||| | |||||| || |||||    |   |||| || ||
gtaaataaggaatttatatagctagctcgtaaagtaccttacccaccttatatcctacaacctatcttgaaattttattggctgactttgtgaatgaaacggtgtcttacagTTATCTTGGAACATTTTGATCAAGTCGTTGGTGATTGCTTCATGGATTGTGTCAACTGTCTTATTGGTTTTGCAAATAACAAGTGCACTCCTCGGATTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaggcgggttcttcacattttctcaccacctctagccggtttgttccgcagTTGTGCTTGAGAATTTTGATCAAGTCGCAGGAGACTGCTTTATGGATTGCGTCAACTGTCTTATGGCTTTTGCGAACAACAAAACTAGCTCTCGAATAAG
                       ttctcac  putative branch site (score: 2)
                                           tttgttcc  putative PPT
                  acatttt  TA-rich tract