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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACGCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACGTTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC

Basic information

species Selaginella moellendorffii
transcript EFJ37744
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37744 (Selaginella moellendorffii), 3'ss of exon 20
lower sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 15
-----------------------------------------------gtact-cttacacgcttgctgttttcttgtctgcttatttgctggttc--cagGTGACGACGCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACGTTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC
                                                |||| || |      | |   ||||    |||    ||   || |||  ||||| ||||| || |||||||||||||||||||| |||||  | || ||  | |||||  | || ||||| ||||| || || ||||| ||  | ||||| |
ttttccctttacaaatgtgaaatgtactttgtcatttacaggtggaattacttctgatgtatgttcctctttcccccctggggtttgcttgattctgcagGTTACGACCCCATTGTTGAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAGCGTTTGACATTTGACTCTTCTTCTCCAAATGGCATACTTCTCTTCC

upper sequence: EFJ37744 (Selaginella moellendorffii), 3'ss of exon 20
lower sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
----------------------------------------------------------------------------------------------------------------------------------gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACGCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACGTTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC
                                                                                                                                   || |  | |   | |  | |  |||  ||| |||   |  | | |  |||| ||||| ||||||||||||||||||||||| |||||    ||||| || ||||||||||| ||||| ||||| || || ||||| ||  |||| || |
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACGCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACGTTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC
        ctcttac  putative branch site (score: 3)
                                           ttattt  TA-rich tract