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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACCCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACATTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC

Basic information

species Selaginella moellendorffii
transcript EFJ32102
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32102 (Selaginella moellendorffii), 3'ss of exon 20
lower sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 15
-----------------------------------------------gtact-cttacacgcttgctgttttcttgtctgcttatttgctggttc--cagGTGACGACCCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACATTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC
                                                |||| || |      | |   ||||    |||    ||   || |||  ||||| |||||||| |||||||||||||||||||| |||||  | || ||  | |||||  | |||||||| ||||| || || ||||| ||  | ||||| |
ttttccctttacaaatgtgaaatgtactttgtcatttacaggtggaattacttctgatgtatgttcctctttcccccctggggtttgcttgattctgcagGTTACGACCCCATTGTTGAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAGCGTTTGACATTTGACTCTTCTTCTCCAAATGGCATACTTCTCTTCC

upper sequence: EFJ32102 (Selaginella moellendorffii), 3'ss of exon 20
lower sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 21
----------------------------------------------gtactcttacacgcttgctgttttcttgtctgctta--tttgct-ggttc--cagGTGACGACCCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACATTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC
                                               ||||  |  | |  || |  | |     || ||    ||  || | |||  ||||| || ||||||||||| |||||||||||||| |||||  | || ||  | |||||  | |||||||| ||||| || || ||||| ||  | ||||| |
ttctaattttccctttataaatgtactttgtcatttacatgtgtaattacttctg-atgtatgttcctcttccccctcctggggttcacttgattctgcagGTTACCACCCCGTTGTTAAAGTTCATGGCTGAGTTTGTGCTAAATAAAGCTCAGCGTTTGACATTTGACTCTTCTTCTCCAAATGGCATACTTCTCTTCC

upper sequence: EFJ32102 (Selaginella moellendorffii), 3'ss of exon 20
lower sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 22
----------------------------------------------------------------------------------------------------------------------------------gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACCCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACATTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC
                                                                                                                                   || |  | |   | |  | |  |||  ||| |||   |  | | |  |||| ||||||||||||||||||||||||||||| |||||    ||||| || ||||||||||| ||||| ||||| || || ||||| ||  |||| || |
gtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtagGTTACGACCCCGTTGTTGAAGTTCATGGCTGAGTTTGTGCATAACAAAACGCAGCGCCTTACTTTTGATTCTTCTTCTCCAAATGGCATCCTGCTTTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactcttacacgcttgctgttttcttgtctgcttatttgctggttccagGTGACGACCCCGTTGTTGAAGTTCATGGCTGAATTTGTCGTGAACAAGACCCAGCGCCTTACATTTGAGTCTTCATCGCCCAATGGAATTTTGCTCTTTC
        ctcttac  putative branch site (score: 3)
                                           ttattt  TA-rich tract