1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagaccgtgttgctaacttattcgcttagtttttaagaagttcgtgttctagGCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGGTCTTTCATGATGTTTGATGTTCGGAAGCAAGACAA
species | Selaginella moellendorffii |
transcript | EFJ28980 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATG GCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGATGTGGAAACGGGEST: gi|169027104|gb|FE435638.1|FE435638
genomic: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATGgtaagaccgt ... cgtgttctagGCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGG
EST: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATG GCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGGEST: gi|169027105|gb|FE435639.1|FE435639
genomic: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATGgtaagaccgt ... cgtgttctagGCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGG
EST: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATG GCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGGEST: gi|169102476|gb|FE508026.1|FE508026
genomic: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATGgtaagaccgt ... cgtgttctagGCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGG
EST: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATG GCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGGEST: gi|169034676|gb|FE443410.1|FE443410
genomic: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATGgtaagaccgt ... cgtgttctagGCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGG
EST: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATG GCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGG
genomic: CACTCGTGTTAAGGCTGCCTTCTCAACCCGATACAAGTGTTTCTGCGATGgtaagaccgt ... cgtgttctagGCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGG
gtaagaccgtgttgctaacttattcgcttagtttttaagaagttcgtgttctagGCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGGTCTTTCATGATGTTTGATGTTCGGAAGCAAGACAA
tgctaac putative branch site (score: 15)
ttagtttttaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaccgtgttgctaacttattcgcttagtttttaagaagttcgtgttctagGCTGCCTCGCTGATCCATAATGGCCTTTTTCTGGCGGGTTGTGGAAACGGGTCTTTCATGATGTTTGATGTTCGGAAGCAAGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA