1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtttttctttcttttttcattcgtcactcatcctaactcgtcgtgttgatgttcattgtaacagGTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCTGTCCTTGATTTTTGCTACAACAATTCGTCAGCTATG
species | Selaginella moellendorffii |
transcript | EFJ21842 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCTCTTGACATCGAACGTACCTGACACAATTCCTCNTAGAGCACAG GTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCTEST: gi|169081057|gb|FE490763.1|FE490763
genomic: TGCAGCTCTTGACATCGAACGTACCTGACACAATTCCTCCTAGAGCACAGgtttttcttt ... attgtaacagGTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCT
EST: TGCAGCTCTTGACATCGAACGTACCTGACACAATTCCTCCTAGAGCACAG GTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCTEST: gi|169099524|gb|FE500529.1|FE500529
genomic: TGCAGCTCTTGACATCGAACGTACCTGACACAATTCCTCCTAGAGCACAGgtttttcttt ... attgtaacagGTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCT
EST: TGCAGCTCTTGACATCGAACGTACCTGACACAATTCCTCCTAGAGCACAG GTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCTEST: gi|169094037|gb|FE494041.1|FE494041
genomic: TGCAGCTCTTGACATCGAACGTACCTGACACAATTCCTCCTAGAGCACAGgtttttcttt ... attgtaacagGTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCT
EST: TGCAGCTCTTGACATCGAACGTACCTGACACAATTCCTCCTAGAGCACAG GTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCT
genomic: TGCAGCTCTTGACATCGAACGTACCTGACACAATTCCTCCTAGAGCACAGgtttttcttt ... attgtaacagGTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCT
tcttttttcattcgtcactcatcctaactcgtcgtgttgatgttcattgtaacagGTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCTGTCCTTGATTTTTGCTACAACAATTCGTCAGCTATG
tttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttctttcttttttcattcgtcactcatcctaactcgtcgtgttgatgttcattgtaacagGTACAATGTCCAGTGGAAGTCACCAACCTGTCTCCAAGCAGAGAAATTCCTGTCCTTGATTTTTGCTACAACAATTCGTCAGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT