Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaatctttcggctgcatatgagaaatactttgacttgttttaaagcagGACGTTGAACATGTTTCTGTGTCTAACAATGCGTGCTGGGCGATAGGCGAAATTGCAATCAAG

Basic information

species Selaginella moellendorffii
transcript EFJ11805
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169051583|gb|FE458466.1|FE458466
EST:     ACCTCCAACCGAGGATGGGTGATTTCCTCAGTCTTGCATCAAGGCAACTG                         GACGTTGAACATGTTTCTGTGTCTAACAATGCGTGCTGGGCGATAGGCGAA
genomic: ACCTCCAACCGAGGATGGGTGATTTCCTCAGTCTTGCAGCAAGGCAACTGgtattcaatc ... tttaaagcagGACGTTGAACATGTTTCTGTGTCTAACAATGCGTGCTGGGCGATAGGCGAA
EST: gi|169072873|gb|FE480772.1|FE480772
EST:     ACCTCCAACCGAGGATGGGTGATTTCCTCAGTCTTGCAGCAAGGCAACTG                         GACGTTGAACATGTTTCTGTATCTAACAATGCGTGCTGGGCGATAGGCGAA
genomic: ACCTCCAACCGAGGATGGGTGATTTCCTCAGTCTTGCAGCAAGGCAACTGgtattcaatc ... tttaaagcagGACGTTGAACATGTTTCTGTGTCTAACAATGCGTGCTGGGCGATAGGCGAA
EST: gi|169033858|gb|FE442202.1|FE442202
EST:     ACCTCCAACCGAGGATGGGTGATTTCCTCAGTCTTGCAGCAAGGCAACTG                         GACGTTGAACATGTTTCTGTGTCTAACAATGCGTGCTGGGCGATAGGCGAA
genomic: ACCTCCAACCGAGGATGGGTGATTTCCTCAGTCTTGCAGCAAGGCAACTGgtattcaatc ... tttaaagcagGACGTTGAACATGTTTCTGTGTCTAACAATGCGTGCTGGGCGATAGGCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattcaatctttcggctgcatatgagaaatactttgacttgttttaaagcagGACGTTGAACATGTTTCTGTGTCTAACAATGCGTGCTGGGCGATAGGCGAAATTGCAATCAAG
                                  ctttgac  putative branch site (score: 4)
                                        cttgtttt  CT-rich tract
                                         ttgttttaaa  TA-rich tract