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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtgtgatggctagcttacattcatgacatgacgctatgattctttttttttttttttggttcttccttgcggcagATGCTTCTTTCGCGGAAGCTCTTTATGGCTTACGGAGACAGCCAGTGGAGATTGTAACCGATGTGACACAGAAAAAATCGTCGCTTCCTTCTAGAGCCGG

Basic information

species Selaginella moellendorffii
transcript EFJ38878
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056506|gb|FE464914.1|FE464914
EST:     CTTCGCATTTCTAATGCTAATTCTCGAGGCGCACAACGTCCGGACAGCGG                         ATGCTTCTTTCGCGGAAGCTCTTTATGGCTTACGGAGACAGCCAGTGGAGA
genomic: CTTCGCATTTCTAATGCTAATTCTCGAGGCGCACAACGTCCGGACAGCGGgtattgtgtg ... cttgcggcagATGCTTCTTTCGCGGAAGCTCTTTATGGCTTACGGAGACAGCCAGTGGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgacatgacgctatgattctttttttttttttttggttcttccttgcggcagATGCTTCTTTCGCGGAAGCTCTTTATGGCTTACGGAGACAGCCAGTGGAGATTGTAACCGATGTGACACAGAAAAAATCGTCGCTTCCTTCTAGAGCCGG
             ctatgattcttttttt  CT-rich tract
 tatgattctttttttt  TA-rich tract