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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgtttagaagcgataactggcttagaaaacttggagcctggttttcttctacgctgcatacatgtttcataactaacaagttcttcctctttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTTGAACTCCCCGACACCGTCGACTTCATGGGACGTAAAATCGATCTCACAC

Basic information

species Selaginella moellendorffii
transcript EFJ38264
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169046859|gb|FE455055.1|FE455055
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169054335|gb|FE460780.1|FE460780
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169055318|gb|FE461127.1|FE461127
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169046858|gb|FE455054.1|FE455054
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169113538|gb|FE515073.1|FE515073
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGGACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169063605|gb|FE471711.1|FE471711
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169077595|gb|FE484857.1|FE484857
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169038793|gb|FE450186.1|FE450186
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169112027|gb|FE512252.1|FE512252
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169050628|gb|FE459670.1|FE459670
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAAGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169033566|gb|FE442118.1|FE442118
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169064667|gb|FE473686.1|FE473686
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169104760|gb|FE505381.1|FE505381
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169111221|gb|FE509613.1|FE509613
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169111713|gb|FE514018.1|FE514018
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169054336|gb|FE460781.1|FE460781
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169033565|gb|FE442117.1|FE442117
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169051269|gb|FE457619.1|FE457619
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169112028|gb|FE512253.1|FE512253
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169110014|gb|FE510525.1|FE510525
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169103691|gb|FE506888.1|FE506888
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169067620|gb|FE475310.1|FE475310
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169026634|gb|FE433920.1|FE433920
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGAT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGAT
EST: gi|169106058|gb|FE505653.1|FE505653
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169036562|gb|FE444133.1|FE444133
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169047625|gb|FE455209.1|FE455209
EST:     TTTAGCGCATTTCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: TTTAGCGCA--TCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169102905|gb|FE505270.1|FE505270
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169104787|gb|FE505382.1|FE505382
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169110015|gb|FE510526.1|FE510526
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169077594|gb|FE484856.1|FE484856
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169106027|gb|FE504387.1|FE504387
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169038792|gb|FE450185.1|FE450185
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169106057|gb|FE505652.1|FE505652
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169107173|gb|FE506053.1|FE506053
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|70670748|gb|DN839325.1|DN839325
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169107174|gb|FE506054.1|FE506054
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCCGT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCC-GT
EST: gi|169038388|gb|FE446089.1|FE446089
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169026633|gb|FE433919.1|FE433919
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169113537|gb|FE515072.1|FE515072
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169103692|gb|FE506889.1|FE506889
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169064666|gb|FE473685.1|FE473685
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169051283|gb|FE457620.1|FE457620
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
EST: gi|169055317|gb|FE461126.1|FE461126
EST:     CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAA                         ATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT
genomic: CGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 26 (upstream exon), 35 (downstream exon)
Score: 30

ACTGACAGTCCAAAATTCTGTGAGTTTTGTGGGTCCTTTGGCAACCACATCGTTTAGCGCATCAGCTTCGTTCGAAGTCAGGAGTCCAAAGCGCGTGCAAgtaagatcat ... tttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTTGAACTCCCCGACACCGTCGACTTCATGGGACGTAAAATCGATCTCACAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctacgctgcatacatgtttcataactaacaagttcttcctctttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTTGAACTCCCCGACACCGTCGACTTCATGGGACGTAAAATCGATCTCACAC
                                    ttcttcctctttaac  CT-rich tract
                    tttcataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcgtttagaagcgataactggcttagaaaacttggagcctggttttcttctacgctgcatacatgtttcataactaacaagttcttcctctttaacgcagATTAAATTCGAGGAAGGAGTGATTGGAACACCGCAGCTCACAGATTCCGTTGAACTCCCCGACACCGTCGACTTCATGGGACGTAAAATCGATCTCACAC

- - - agaagcg
- - - - - - - - -ctggctt
- - - - - - - - - - - - - - - - tggagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttcct