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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gagtgcgtgttccgagagatttcttcttttctaagaagattttacttCAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAG

Basic information

species Selaginella moellendorffii
transcript EFJ37043
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37043 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G062524_T02 (Zea mays), 3'ss of exon 2
---------------------------------------------gagtgcgtgttccgagagatttcttcttttctaa-----gaagattttacttCAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAG
                                                | | | |  |   | |    |||  ||||         | |   | ||  ||||  |  || |||| || || |||||||| || |||||| | ||||| ||||||| ||| |||||||||||||| || ||||| ||||| |||
ctacgattcggttgtgcttgtcaaattagcattattaggcaatggcgctccttatctcattataccatttcacttcttgatgtcatacacaattctgtagATCCTAAGGAAACTCAAACATGAGAACATAATTGAAATGATCGATGCCTTTGAAACCCCTCAGGAGTTTTGTGTTGTCACAGAGTTTGCTCAG

upper sequence: EFJ37043 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA20G16860.1 (Glycine max), 3'ss of exon 2
-----------------------------------------------------gagtgcgtgttccgagagatttcttcttttctaagaagattttacttCAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAG
                                                      ||||  | | | ||    |  | | |    |    | ||||| |   |||| ||  |  |  | ||||| |  || |||||  ||||||| ||| | ||||||||||| || || |||||||| || |||||||||||||| 
atttattattgttgctgctaattattataattattaatttattaattacttataagtgtttctgctgactagtgacatttgaaattcataaattttgc---agATCTTAAGAAAGTTGAAGCATGGAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAA

upper sequence: EFJ37043 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA10G22860.1 (Glycine max), 3'ss of exon 2
-----------------------------------------------------gagtgcgtgttccgagagatttcttcttttctaagaagattttacttCAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAG
                                                      ||||  | | | ||  | |  | | |    |    | ||||| |   |||| || ||  |  ||||||| |  || |||||  ||||||| ||| | ||||||||||| || || |||||||| || |||||||||||||| 
tttaattattgttgttgctaattattataattaattatttattaattacttataagtgtttctgctgactggtgacatgtgacattcataaattttgc---agATCTTACGAAAGTTAAAGCATGGAAATATTATTCAAATGCTCGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAA

upper sequence: EFJ37043 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S53_93V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------gagtgcgtgttccgagagatttcttcttttctaagaag-attttacttCAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAG
                                                  |   || | |  |  | | ||    ||   |||| |  || |  || ||||| ||||||||| ||||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| ||||| ||||| || ||||| |||
tttcacgattatgtaatcatgtagtttttatgtgttaaagaaataatcaaaagacgggatttgtaatacttgcaattcgttaagtaccatgtctctccagATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAG

upper sequence: EFJ37043 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S72_260V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------------------------gagtgcgtgttccgagagatttcttcttttctaagaag--attttacttCAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAG
                                        |  | | |    || | |||| |   ||| | |   |  || |   | || || |||| |||||| ||||| ||||| || ||||||||||| ||||| ||||||||    |||||||||||||| ||||| ||  ||      
catgaaatcatattgttttcatgagtttgtgaatattcacatggaggggcttgaaacatttgtcaatttgttaagtgccatgtctttccaaatattgcagCAACTTAAGCATGAGAATATCATAGAAATGCTCGATGCTTTTGAAAGTGACCAGGAGTTTTGTGTAGTGACCGAGATT------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgcgtgttccgagagatttcttcttttctaagaagattttacttCAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAG
                                                      ttttactt  CT-rich tract
                                           aagatttta  TA-rich tract