1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtcttttttgtcgaaaagtttggtttttagtgattgtgctgatgttttgtttgtgattctcagGGAGCAGACATCTCGATGAAAGACATCGATACACTTTTGAGTTTGTTGACTGAAAAGAAACGCAAGGCCGAACGGGAGGAGGCTGAAACAAATTTGGAGG
species | Selaginella moellendorffii |
transcript | EFJ35654 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCCAGCTCTGCGTCACCGGGAGAGCACCTGCGGCTTGCTCTCAAACAG GGAGCAGACATCTCGATGAAAGACATCGATACACTTTTGAGTTTGTTGACTEST: gi|169025400|gb|FE436014.1|FE436014
genomic: TTGCCAGCTCTGCGTCACCGGGAGAGCACCTGCGGCTTGCTCTCAAACAGgtcttttttg ... tgattctcagGGAGCAGACATCTCGATGAAAGACATCGATACACTTTTGAGTTTGTTGACT
EST: TTGCCAGCTCTGCGTCACCGGGAGAGCACCTGCGGCTTGCTCTCAAACAG GGAGCAGACATCTCGATGAAAGACATCGATACACTTTTGAGTTTGTTGACT
genomic: TTGCCAGCTCTGCGTCACCGGGAGAGCACCTGCGGCTTGCTCTCAAACAGgtcttttttg ... tgattctcagGGAGCAGACATCTCGATGAAAGACATCGATACACTTTTGAGTTTGTTGACT
tgtcgaaaagtttggtttttagtgattgtgctgatgttttgtttgtgattctcagGGAGCAGACATCTCGATGAAAGACATCGATACACTTTTGAGTTTGTTGACTGAAAAGAAACGCAAGGCCGAACGGGAGGAGGCTGAAACAAATTTGGAGG
tgctgat putative branch site (score: 14)
ttctc putative PPT
aaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttttttgtcgaaaagtttggtttttagtgattgtgctgatgttttgtttgtgattctcagGGAGCAGACATCTCGATGAAAGACATCGATACACTTTTGAGTTTGTTGACTGAAAAGAAACGCAAGGCCGAACGGGAGGAGGCTGAAACAAATTTGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG