1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgtgacattcttctcaagttctttgcttccaagctcttttcttctgttttttttttcttctcttttacattcacagGTCAGGCATGCTGTAATCCCTGAGAATGGTTGTGTTAGCACAAAGAAGCTGGCACAGCACCGAGGGCGAGCTCACAAGCTTGCCATCGAGCCTGGAAGCC
species | Selaginella moellendorffii |
transcript | EFJ34971 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTTCTCCAACGATCGAAGCGTTGTGACCTGTGCTGCCGATGGCCAA GTCAGGCATGCTGTAATCCCTGAGAATGGTTGTGTTAGCACAAAGAAGCTGEST: gi|169110502|gb|FE512391.1|FE512391
genomic: TGCCTTTCTCCAACGATCGAAGCGTTGTGACCTGTGCTGCCGATGGCCAAgtacgtgaca ... acattcacagGTCAGGCATGCTGTAATCCCTGAGAATGGTTGTGTTAGCACAAAGAAGCTG
EST: TGCCTTTCTCCAACGATCGAAGCGTTGTGACCTGTGCTGCCGATGGCCAA GTCAGGCATGCTGTAATCTCTGAGAATGGTTGTGTTAGCACAAAGAAGCTGEST: gi|169062080|gb|FE469672.1|FE469672
genomic: TGCCTTTCTCCAACGATCGAAGCGTTGTGACCTGTGCTGCCGATGGCCAAgtacgtgaca ... acattcacagGTCAGGCATGCTGTAATCCCTGAGAATGGTTGTGTTAGCACAAAGAAGCTG
EST: TGCCTTTCTCCAACGATCGAAGCGTTGTGACCTGTGCTGCCGATGGCCAA GTCAGGCATGCTGTAATCTCTGAGAATGGTTGTGTTAGCACAAAGAAGCTG
genomic: TGCCTTTCTCCAACGATCGAAGCGTTGTGACCTGTGCTGCCGATGGCCAAgtacgtgaca ... acattcacagGTCAGGCATGCTGTAATCCCTGAGAATGGTTGTGTTAGCACAAAGAAGCTG
tttgcttccaagctcttttcttctgttttttttttcttctcttttacattcacagGTCAGGCATGCTGTAATCCCTGAGAATGGTTGTGTTAGCACAAAGAAGCTGGCACAGCACCGAGGGCGAGCTCACAAGCTTGCCATCGAGCCTGGAAGCC
ctcttttcttctgttt CT-rich tract
ttttttttttcttctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgacattcttctcaagttctttgcttccaagctcttttcttctgttttttttttcttctcttttacattcacagGTCAGGCATGCTGTAATCCCTGAGAATGGTTGTGTTAGCACAAAGAAGCTGGCACAGCACCGAGGGCGAGCTCACAAGCTTGCCATCGAGCCTGGAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG