1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagattccctccactttttctttctgtcttttttttttgttgcttgattctgggctaaagctctttcgctatggttgtgtctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTACAACTTTGGAGAACTTCTTGCGCATCCTATA
species | Selaginella moellendorffii |
transcript | EFJ34882 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTG GACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCTTAGGAGATAACATTTACEST: gi|169107351|gb|FE504151.1|FE504151
genomic: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTGgtaagattcc ... ctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTAC
EST: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTG GACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTACEST: gi|169054786|gb|FE460582.1|FE460582
genomic: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTGgtaagattcc ... ctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTAC
EST: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTG GACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCTTAGGAGATAACATTTACEST: gi|169100885|gb|FE501708.1|FE501708
genomic: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTGgtaagattcc ... ctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTAC
EST: ACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTG GACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTACEST: gi|169100886|gb|FE501709.1|FE501709
genomic: ACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTGgtaagattcc ... ctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTAC
EST: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTG GACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTACEST: gi|169107352|gb|FE504152.1|FE504152
genomic: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTGgtaagattcc ... ctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTAC
EST: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTG GACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTACEST: gi|169074432|gb|FE480818.1|FE480818
genomic: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTGgtaagattcc ... ctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTAC
EST: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTG GACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCTTAGGAGATAACATTTAC
genomic: TCTACTTGGCTTACACGTCAGTGGAGAGCCTGTCGGATTCCTTCAAGCTGgtaagattcc ... ctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTAC
tttgttgcttgattctgggctaaagctctttcgctatggttgtgtctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTACAACTTTGGAGAACTTCTTGCGCATCCTATA
ggctaaa putative branch site (score: 10)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattccctccactttttctttctgtcttttttttttgttgcttgattctgggctaaagctctttcgctatggttgtgtctgtatgtagGACCTGGCTTTCGACTTGTCCTTGGCAGCGCTCCTAGGAGATAACATTTACAACTTTGGAGAACTTCTTGCGCATCCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA