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gtataactagttctaccttttttttttttagagtctaatccaatctatggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAGCACGGATTATGTGACCATTGGTGACGTCGTGGTTAAAGATCAG
species | Selaginella moellendorffii |
transcript | EFJ34434 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATG ATGCTTCGATTGCTATCCAGTATGGGACTGGGCAGATGGCTGGATTTTTGAEST: gi|169055215|gb|FE461076.1|FE461076
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: ATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169025759|gb|FE433669.1|FE433669
genomic: ATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169114469|gb|FE516539.1|FE516539
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169057177|gb|FE464688.1|FE464688
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169060204|gb|FE467566.1|FE467566
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169110930|gb|FE509335.1|FE509335
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169048945|gb|FE456062.1|FE456062
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169034782|gb|FE445635.1|FE445635
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169060973|gb|FE470603.1|FE470603
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169110671|gb|FE509817.1|FE509817
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169031936|gb|FE440662.1|FE440662
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169044449|gb|FE451073.1|FE451073
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169065201|gb|FE474025.1|FE474025
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169058294|gb|FE466035.1|FE466035
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169093447|gb|FE495728.1|FE495728
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169040208|gb|FE448949.1|FE448949
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169047467|gb|FE455662.1|FE455662
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169080226|gb|FE488905.1|FE488905
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169031798|gb|FE438483.1|FE438483
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAEST: gi|169061924|gb|FE470218.1|FE470218
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
EST: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATG GTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
genomic: GTTGCACCATCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCCGATGgtataactag ... tggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGA
ataactagttctaccttttttttttttagagtctaatccaatctatggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAGCACGGATTATGTGACCATTGGTGACGTCGTGGTTAAAGATCAG
gtctaat putative branch site (score: 76)
ttttttttttttagag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataactagttctaccttttttttttttagagtctaatccaatctatggctcgtagGTACTTCGATTGCTATCCAGTATGGAACTGGGCAGATGGCTGGATTTTTGAGCACGGATTATGTGACCATTGGTGACGTCGTGGTTAAAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA