1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtataactagttctacttttttttattcttctgtagagtctaatccaatctatggctcgtagATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTAGCACGGATTATGTGACCATTGGTGACGTCGTGGTTAAAGATCAG
species | Selaginella moellendorffii |
transcript | EFJ34432 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATG ATGCTTCGATTGCTATCCAGTATGGGACTGGGCAGATGGCTGGATTTTTGAEST: gi|169039489|gb|FE449164.1|FE449164
genomic: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATGgtataactag ... tggctcgtagATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTA
EST: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATG ATGCTTCGATTGCTATCCAGTATGGGACTGGGCAGATGGCTGGATTTTTGAEST: gi|169030853|gb|FE439798.1|FE439798
genomic: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATGgtataactag ... tggctcgtagATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTA
EST: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATG ATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTAEST: gi|169050841|gb|FE459363.1|FE459363
genomic: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATGgtataactag ... tggctcgtagATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTA
EST: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATG ATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTAEST: gi|169048188|gb|FE455460.1|FE455460
genomic: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATGgtataactag ... tggctcgtagATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTA
EST: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATG ATGCTTCGATTGCTATCCAGTATGGGACTGGGCAGATGGCTGGATTTTTGA
genomic: GTTGCACCGTCGCTACAAGTCCAGGAAATCGAGTACTTACAAGCCTGATGgtataactag ... tggctcgtagATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTA
tagttctacttttttttattcttctgtagagtctaatccaatctatggctcgtagATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTAGCACGGATTATGTGACCATTGGTGACGTCGTGGTTAAAGATCAG
gtctaat putative branch site (score: 7)
tacttttttttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataactagttctacttttttttattcttctgtagagtctaatccaatctatggctcgtagATGCTTCGATTGCTATCCAGTATGGGTCTGGGCAGATGGCTGGATTTTTTAGCACGGATTATGTGACCATTGGTGACGTCGTGGTTAAAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA