1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaattcctctgtttctgggcggattcacttagtaagctttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA
species | Selaginella moellendorffii |
transcript | EFJ34304 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169038060|gb|FE446658.1|FE446658
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169043108|gb|FE454022.1|FE454022
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTEST: gi|70671143|gb|DN839720.1|DN839720
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169038061|gb|FE446659.1|FE446659
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169103365|gb|FE507342.1|FE507342
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACTGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169044789|gb|FE454104.1|FE454104
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169073958|gb|FE481670.1|FE481670
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169067196|gb|FE474964.1|FE474964
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169034020|gb|FE444210.1|FE444210
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169073959|gb|FE481671.1|FE481671
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169034021|gb|FE444211.1|FE444211
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169055910|gb|FE465111.1|FE465111
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169055911|gb|FE465112.1|FE465112
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATTATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAGCTCACGTCTGTCGTCCAGAAGAGGTEST: gi|169043107|gb|FE454021.1|FE454021
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
EST: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGG GCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
genomic: GATGCGCACCGAGATCATCATCCGGGCGACGCGAACGCAGAGCGTTTTGGgtaaattcct ... ttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGT
gtaaattcctctgtttctgggcggattcacttagtaagctttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA
ctttgat putative branch site (score: 43)
taaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattcctctgtttctgggcggattcacttagtaagctttgattctagGCGAAAAGGGTCGCCGAATTCGAGAACTCACGTCTGTCGTCCAGAAGAGGTTCTCGTTCCCCGAGAGCACAGTGGAGCTGTATGCCGAGAAGGTGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT