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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggaatgaattccttgtttttgccttgactggatctcatgatcttcgcaaatgcgaatgcagATGGTGGTGGAAGAGATGAACATCCTGACCACCGTCTTCCTCCGCTACGACAACGAGAAGATCTACTACCCGAATTCCGTGCTGGCGACCAAACCGATCA

Basic information

species Selaginella moellendorffii
transcript EFJ33329
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ33329 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv03s0038g03030.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------gtctggaatgaattccttgtttttgccttgactggatctcatgatcttcg--caaatgcgaatgcagATGGTGGTGGAAGAGATGAACATCCTGACCACCGTCTTCCTCCGCTACGACAACGAGAAGATCTACTACCCGAATTCCGTGCTGGCGACCAAACCGATCA
                                                      ||   |     | | || ||||| | |  | |  |     | || |||   |||||| |  | |||||||| |||||||||||||||||| |||| || ||||| ||  |   |||||||  |||||||   | ||| ||   |   || || || |  |      
gttgaggtacaaacagttgaaacttagttttgtgatcatatatctttttgtgtatccatacctgttgcattttttttccatccattctaggctctaattttcattcaaatgagGTT-CAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattccttgtttttgccttgactggatctcatgatcttcgcaaatgcgaatgcagATGGTGGTGGAAGAGATGAACATCCTGACCACCGTCTTCCTCCGCTACGACAACGAGAAGATCTACTACCCGAATTCCGTGCTGGCGACCAAACCGATCA
               ccttgac  putative branch site (score: 4)
      ttgttttt  TA-rich tract