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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatacaaatcaagcatttcttatccccaatctatactcgattaaattgacaaacattgtgtgaattccaagGTCTCGTGCAAGGTTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA

Basic information

species Selaginella moellendorffii
transcript EFJ32860
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32860 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os02g34580.1 (Oryza sativa), 3'ss of exon 3
-------------------gtgagtatacaaatcaagcatttcttatccccaatctatactcgattaa-attgacaaacattgtgtgaattcca----agGTCTCGTGCAAGGTTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                   |  |||||  ||||      ||  ||  ||    |   |  ||    || | | || |    |||    ||||      ||| || ||||||||||||||||| |||   ||||| |||||||| || ||||||||||||||||| ||||||||  ||||||||  || | | ||| | ||
caattttcatgctaggtgtgaaagtatgtaaatatgtggttattttgccattttaattgttcagcaaagactaactagatgtgtcctgattcatgaacagGCCTGGTGCAAGGTTGGGCAGCTATTGTGATGGGAATTCTCTCTGGTAGCATTCCATGGTACACCATGATGGTGCTGCACAAGAAATGGTCATTCATGCA

upper sequence: EFJ32860 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os01g65000.1 (Oryza sativa), 3'ss of exon 1
------------------------gtgagta---tacaaatcaagcatttcttatccccaatctatactcgattaaattgacaaacattgtgtgaattccaagGTCTCGTGCAAGGTTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                        || ||||   |    |||  |   |     |  |  |||  |  |  |     |   || |      ||  ||    ||| || ||||| |||||||| |||||    ||||| || |||||||||||||| || |||| |||||||||||| ||||||||||| |||| | |||| ||
gatttatctgaaattttaaaccgagttagtaaaatctgtatctggggctgggcgtaactgatccgtcttgaacggcgtctgcatatgcatggtcgatc---agGCCTGGTGCAGGGTTGGGCGGCGATCGTGATGGGCATCCTCTCCGGCAGCATCCCGTGGTTCACGATGATGGTGGTGCACAAGCGGTCGCGCCTCCTGCA

upper sequence: EFJ32860 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G335218_T01 (Zea mays), 3'ss of exon 1
-----gtgagtatacaaatcaagcatttcttatccccaatctatact-cgattaaattgacaaacattgtgtgaattcca--agGTCTCGTGCAAGGTTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
     ||   ||||||         | |   ||| | | ||||  || | | |       | | | |  ||    |||    ||| || || || || ||||| |||||    ||||| || ||||| |||||||| || |||| |||||||||||| ||||||||||| || | | | || ||
gtacagtacatatacacgattc-tgtctacaatcactactctactctactactgccagtgccagcctgatgatggttcttgtagGCCTGGTCCAGGGCTGGGCGGCGATCGTGATGGGCATGCTCTCGGGCAGCATCCCGTGGTGCACGATGATGGTGGTGCACAAGCGCTCCCGCCTGCTGCA

upper sequence: EFJ32860 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv07s0031g02990.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtatacaaatcaagcatttcttatccccaatctatactcgattaaattgacaaaca--ttgtgtgaattccaagGTCTCGTGCAAGGTTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
  |  | |     || |   | |  | |    ||   | |   ||  ||||  | ||| |  |  |    |||   ||| ||||| ||||| ||||| || || |  |||||||| |||||||||||| ||||||||| ||| |||||| || | |||||||| ||  |  |||| ||
--gtttctctttctccattttcttctttggagaaaaaaaaaatgaacaaataaataaataaatcattcatatttacagGACTCGTTCAAGGATGGGCGGCCATATTAATGGGGATCCTCTCCGGCAGCGTTCCATGGTTCACCATGATGATCCTCCACAAGCGCTCCACTCTCCTCCA

upper sequence: EFJ32860 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv07s0031g02950.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------gtgagtatacaaatcaag--catttcttatccccaatctatactcgattaaattgacaaacattgtgtgaattccaagGTCTCGTGCAAGGTTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                            | | |  |    | ||    |  | ||||                | |||  |||||   |     |||||    ||| || || ||||| ||||| || ||   |||||| ||||||||||||||| | ||||||| ||| |||||| || | |||||||| | | |  | || ||
gtcacatctatgcgtttttttttttttcttattccatgttttaaatttaagttttattttttggtggactgataataagatgacatgtaaataatgaatgagcagGACTAGTTCAAGGATGGGCGGCCATAGTCATGGGCATTCTCTCCGGCAGCGTCCCATGGTTCACCATGATGATCCTCCACAAGCGCTGGACTCTTCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttatccccaatctatactcgattaaattgacaaacattgtgtgaattccaagGTCTCGTGCAAGGTTGGGCAGCGATTTGCATGGGGATTCTCTCCGGCAGCATTCCATGGTACACGATGATGGTCGTGCACAAGCGATCGCCCTTCCTTCA
                           aattgac  putative branch site (score: 3)
                       attaaattgacaaa  TA-rich tract