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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaaaaacaaactttagtttttctcgctctctcatccatcgctggttttgttttcctcttttgtgtgacaactcccagGGCGTGTTTGTTCTGCAAGACACTCGCTTTAGATGGCTAACTCGCATCTCCGTGGACTCGCCTCTCACTCCCTCGGAAGCCAACAACACCACGCTCGCCG

Basic information

species Selaginella moellendorffii
transcript EFJ32385
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169020842|gb|FE429281.1|FE429281
EST:     GGGCGGAGGTTTTCAAGAAGCAGATTGACAATCTCAAAACAAATCACCGG                         GGCGTGTTTGTTCTGCAAGACACTCGCTTTAGATGGCTAACTCGCATCTCC
genomic: GGGCGGAGGTTTTCAAGAAGCAGATTGACAATCTCAAAACAAATCATCGGgtacgcaaaa ... caactcccagGGCGTGTTTGTTCTGCAAGACACTCGCTTTAGATGGCTAACTCGCATCTCC
EST: gi|169020843|gb|FE429282.1|FE429282
EST:     GGGCGGAGGTTTTCAAGAAGCAGATTGACAATCTCAAAACAAATCACCGG                         GGCGTGTTTGTTCTGCAAGACACTCGCTTTAGATGGCTAACTCGCATCTCC
genomic: GGGCGGAGGTTTTCAAGAAGCAGATTGACAATCTCAAAACAAATCATCGGgtacgcaaaa ... caactcccagGGCGTGTTTGTTCTGCAAGACACTCGCTTTAGATGGCTAACTCGCATCTCC
EST: gi|169088448|gb|FE495494.1|FE495494
EST:     GGGCGGAGGTTTTCAAGAAGCAGATTGACAATCTCAAAACAAATCATCGG                         GGCGTGTTTGTTCTGCAAGACACTCGCTTTAGATGGCTAACTCGCATCTCC
genomic: GGGCGGAGGTTTTCAAGAAGCAGATTGACAATCTCAAAACAAATCATCGGgtacgcaaaa ... caactcccagGGCGTGTTTGTTCTGCAAGACACTCGCTTTAGATGGCTAACTCGCATCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgctctctcatccatcgctggttttgttttcctcttttgtgtgacaactcccagGGCGTGTTTGTTCTGCAAGACACTCGCTTTAGATGGCTAACTCGCATCTCCGTGGACTCGCCTCTCACTCCCTCGGAAGCCAACAACACCACGCTCGCCG
                                                ctccc  CT-rich tract
                      ttttgtttt  TA-rich tract