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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgtgtctttagctctgacttttaactggcctgacgttcctggttccagGTATCCTTCACCGAATGTTCTTATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGGAAAACTTGAAACGGAACAAC

Basic information

species Selaginella moellendorffii
transcript EFJ31559
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31559 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA17G03430.1 (Glycine max), 3'ss of exon 6
--------------------------gtaagtcgtgtctttagctctgacttttaactggcctgacgttcctgg------ttccagGTATCCTTCACCGAATGTTCTTATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGGAAAACTTGAAACGGAACAAC
                            || | |  ||| | | | | | | ||||||| | | || ||    |      || |||  | || || ||    || || ||||||||||||||||| |||||||| ||||||||||| || ||| | || || |||                     
gtgagtattagttctgctatacctattgaaatagattctgttgttttaattgttaactgtcttaactttgtatgcatgcttttcagACACCCATCTCCCTCAGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGATATGCAGACTCAG---------------------

upper sequence: EFJ31559 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA07G37180.1 (Glycine max), 3'ss of exon 7
--------------------------gtaagtcgtgtctttagctctgacttttaactggcctgacgttcctgg------ttccagGTATCCTTCACCGAATGTTCTTATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGGAAAACTTGAAACGGAACAAC
                            || | |  ||| | | | | | | ||||||| | | || ||    |      || |||| | || || ||    || || ||||||||||||||||| |||||||| ||||||||||| || ||  | || || |||                     
gtgagtattagttctactatacctattgaaatagattctgttgttttaattgttaactgtcttaactttgtatgaatgcttttcagGCACCCATCTCCCTCGGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGACATGCAGACTCAG---------------------

upper sequence: EFJ31559 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA19G41770.1 (Glycine max), 3'ss of exon 6
---------------------------gta-agtcgtgtctttagctctgacttttaactggcctgacgttcctggttccagGTATCCTTCACCGAATGTTCTTATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGGAAAACTTGAAACGGAACAAC
                           ||  ||   | |   ||      | || ||| |    |     || |   | |||| | ||||| ||    || |||||||||||||||||||| || ||||| ||||| ||||| || ||| | || ||  ||                     
gtgagtactatgaatgcaaatatggatgtgcagaaatatacgtattgtcaaattctaaatattattctactctt--cttcagGCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAG---------------------

upper sequence: EFJ31559 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 3'ss of exon 6
---------------------------------------------gtaagtcgtgtctttagctctgacttttaact--ggcctgacgttcctggtt---------ccagGTATCCTTCACCGAATGTTCTTATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGGAAAACTTGAAACGGAACAAC
                                             ||  |  ||||  ||  |  | | || || ||  |||||||  ||| |  ||          |||  | || || ||   |||||| |||||||| ||||| ||||| ||||||||||| ||||| || ||| | ||||| |||                     
gtgagtttttagaaattttgagttagttctggacttcttttggctgtgggatgtgttgtttccattaatttgtacctcgggcctgaacttctttcttggactttggtcagTCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAG---------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtcgtgtctttagctctgacttttaactggcctgacgttcctggttccagGTATCCTTCACCGAATGTTCTTATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGGAAAACTTGAAACGGAACAAC
                                        cgttcct  CT-rich tract
                       acttttaa  TA-rich tract